Building on x86-bm-7.ocamllabs.io
(from ocaml/opam:debian-unstable@sha256:1d295ed572083ab5916b9b9195219954afa816ee169f48eecca1b2e2b0faad41)
Unable to find image 'ocaml/opam:debian-unstable@sha256:1d295ed572083ab5916b9b9195219954afa816ee169f48eecca1b2e2b0faad41' locally
docker.io/ocaml/opam@sha256:1d295ed572083ab5916b9b9195219954afa816ee169f48eecca1b2e2b0faad41: Pulling from ocaml/opam
7c26de214b34: Pulling fs layer
791d3a768af6: Pulling fs layer
e06237cac4e8: Pulling fs layer
7c26de214b34: Verifying Checksum
7c26de214b34: Download complete
e06237cac4e8: Verifying Checksum
e06237cac4e8: Download complete
791d3a768af6: Verifying Checksum
791d3a768af6: Download complete
7c26de214b34: Pull complete
791d3a768af6: Pull complete
e06237cac4e8: Pull complete
Digest: sha256:1d295ed572083ab5916b9b9195219954afa816ee169f48eecca1b2e2b0faad41
Status: Downloaded newer image for ocaml/opam@sha256:1d295ed572083ab5916b9b9195219954afa816ee169f48eecca1b2e2b0faad41
2022-05-01 14:17.34 ---> using "e16578957f674ca141475612bdd8fe456bdeb3cf55dca9de0669bf5f721951e7" from cache
/: (user (uid 1000) (gid 1000))
/: (env OPAMPRECISETRACKING 1)
/: (env OPAMUTF8 never)
/: (env OPAMEXTERNALSOLVER builtin-0install)
/: (env OPAMCRITERIA +removed)
/: (run (shell "sudo ln -f /usr/bin/opam-dev /usr/bin/opam"))
2022-05-01 14:17.34 ---> using "09ae07f34eca5d84e953ea4b87a3c466448be28706a95338ba19feb13b3b66fd" from cache
/: (run (network host)
(shell "rm -rf ~/opam-repository && git clone -q 'https://github.com/ocaml/opam-repository' ~/opam-repository && git -C ~/opam-repository checkout -q 4ce6f847a29936b1d875b70940837be093fec84e"))
2022-05-01 14:17.34 ---> using "8a62ed72fc23e1663b0f130dbecbe2a8d6a9d36667f58fd75e99df9fc9855900" from cache
/: (run (shell "rm -rf ~/.opam && opam init -ya --bare --config ~/.opamrc-sandbox ~/opam-repository"))
Configuring from /home/opam/.opamrc-sandbox, then /home/opam/.opamrc, and finally from built-in defaults.
Checking for available remotes: rsync and local, git.
- you won't be able to use mercurial repositories unless you install the hg command on your system.
- you won't be able to use darcs repositories unless you install the darcs command on your system.
<><> Fetching repository information ><><><><><><><><><><><><><><><><><><><><><>
[default] Initialised
User configuration:
~/.profile is already up-to-date.
[NOTE] Make sure that ~/.profile is well sourced in your ~/.bashrc.
2022-05-01 14:17.34 ---> using "1da6a21744e622352d23ddb067012a46b76c5e5a957ab9cd9733a836f9d86396" from cache
/: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam switch create --repositories=default '4.07' '4.07.1'"))
<><> Installing new switch packages <><><><><><><><><><><><><><><><><><><><><><>
Switch invariant: ["ocaml-base-compiler" {= "4.07.1"} | "ocaml-system" {= "4.07.1"}]
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> installed base-bigarray.base
-> installed base-threads.base
-> installed base-unix.base
-> retrieved ocaml-base-compiler.4.07.1 (cached)
-> installed ocaml-base-compiler.4.07.1
-> installed ocaml-config.1
-> installed ocaml.4.07.1
Done.
# Run eval $(opam env --switch=4.07) to update the current shell environment
2022-05-01 14:17.34 ---> using "3880561d24c03abf88c189496bf68125d6db520774cbf969d5c04612b4e9ecc6" from cache
/: (run (network host)
(shell "opam update --depexts"))
+ /usr/bin/sudo "apt-get" "update"
- Get:1 http://deb.debian.org/debian unstable InRelease [165 kB]
- Get:2 http://deb.debian.org/debian unstable/main amd64 Packages.diff/Index [63.6 kB]
- Get:3 http://deb.debian.org/debian unstable/main amd64 Packages T-2022-05-01-0201.40-F-2022-04-26-0801.40.pdiff [201 kB]
- Get:3 http://deb.debian.org/debian unstable/main amd64 Packages T-2022-05-01-0201.40-F-2022-04-26-0801.40.pdiff [201 kB]
- Fetched 430 kB in 2s (199 kB/s)
- Reading package lists...
-
2022-05-01 14:17.34 ---> using "44ea039be583eed0371cbacb57f175d2c0495d0d7675097cd74436793c1f4de6" from cache
/: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam install -y ocaml-secondary-compiler"))
The following actions will be performed:
=== install 1 package
- install ocaml-secondary-compiler 4.08.1-1
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved ocaml-secondary-compiler.4.08.1-1 (cached)
-> installed ocaml-secondary-compiler.4.08.1-1
Done.
# Run eval $(opam env) to update the current shell environment
2022-05-01 14:17.34 ---> using "9507bfe77691ad399b4789785fca1071e628ef0b7fb0c88b2bdb432f2518fb88" from cache
/: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "\
\nopam remove -y \"conf-rdkit.1\"\
\nopam install -vy \"conf-rdkit.1\"\
\nres=$?\
\nif [ $res = 31 ]; then\
\n if opam show -f x-ci-accept-failures: \"conf-rdkit.1\" | grep -q '\"debian-unstable\"'; then\
\n echo \"This package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\"\
\n exit 69\
\n fi\
\nfi\
\n\
\n\
\nexit $res\
\n"))
[NOTE] conf-rdkit.1 is not installed.
Nothing to do.
The following actions will be performed:
=== install 1 package
- install conf-rdkit 1
The following system packages will first need to be installed:
librdkit-dev python3-rdkit
<><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><>
opam believes some required external dependencies are missing. opam can:
> 1. Run apt-get to install them (may need root/sudo access)
2. Display the recommended apt-get command and wait while you run it manually (e.g. in another terminal)
3. Attempt installation anyway, and permanently register that this external dependency is present, but not detectable
4. Abort the installation
[1/2/3/4] 1
+ /usr/bin/sudo "apt-get" "install" "-qq" "-yy" "librdkit-dev" "python3-rdkit"
- debconf: delaying package configuration, since apt-utils is not installed
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- Selecting previously unselected package libmaeparser1:amd64.
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- Unpacking libmaeparser1:amd64 (1.2.4-1+b1) ...
- Selecting previously unselected package libpython3.10:amd64.
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- Unpacking libpython3.9-stdlib:amd64 (3.9.12-1) ...
- Selecting previously unselected package librdkit1.
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- Unpacking librdkit1 (202203.2-1) ...
- Selecting previously unselected package librdkit-dev.
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- Unpacking librdkit-dev (202203.2-1) ...
- Selecting previously unselected package python3-pkg-resources.
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- Unpacking python3-pkg-resources (59.6.0-1.2) ...
- Selecting previously unselected package python3.9.
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- Unpacking python3.9 (3.9.12-1) ...
- Selecting previously unselected package python3-numpy.
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- Unpacking python3-numpy (1:1.21.5-1) ...
- Selecting previously unselected package rdkit-data.
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- Unpacking rdkit-data (202203.2-1) ...
- Selecting previously unselected package python3-rdkit.
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- Unpacking python3-rdkit (202203.2-1) ...
- Setting up media-types (7.1.0) ...
- Setting up libpixman-1-0:amd64 (0.40.0-1) ...
- Setting up libxrender1:amd64 (1:0.9.10-1) ...
- Setting up libxcb-render0:amd64 (1.14-3) ...
- Setting up libpython3.9-minimal:amd64 (3.9.12-1) ...
- Setting up libboost-iostreams1.74.0:amd64 (1.74.0-14+b1) ...
- Setting up fonts-freefont-ttf (20120503-10) ...
- Setting up libxcb-shm0:amd64 (1.14-3) ...
- Setting up libgomp1:amd64 (12-20220428-1) ...
- Setting up rdkit-data (202203.2-1) ...
- Setting up libcairo2:amd64 (1.16.0-5) ...
- Setting up libmaeparser1:amd64 (1.2.4-1+b1) ...
- Setting up libblas3:amd64 (3.10.1-1) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
- Setting up libquadmath0:amd64 (12-20220428-1) ...
- Setting up libatomic1:amd64 (12-20220428-1) ...
- Setting up libgfortran5:amd64 (12-20220428-1) ...
- Setting up libubsan1:amd64 (12-20220428-1) ...
- Setting up libboost-serialization1.74.0:amd64 (1.74.0-14+b1) ...
- Setting up libmpdec3:amd64 (2.5.1-2) ...
- Setting up libcoordgen3:amd64 (3.0.0-2) ...
- Setting up python3.9-minimal (3.9.12-1) ...
- Setting up libboost-python1.74.0 (1.74.0-14+b1) ...
- Setting up libcc1-0:amd64 (12-20220428-1) ...
- Setting up liblsan0:amd64 (12-20220428-1) ...
- Setting up libitm1:amd64 (12-20220428-1) ...
- Setting up libpython3.9-stdlib:amd64 (3.9.12-1) ...
- Setting up liblapack3:amd64 (3.10.1-1) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
- Setting up libpython3.10-stdlib:amd64 (3.10.4-3) ...
- Setting up python3.9 (3.9.12-1) ...
- Setting up libpython3-stdlib:amd64 (3.10.4-1) ...
- Setting up libpython3.10:amd64 (3.10.4-3) ...
- Setting up python3.10 (3.10.4-3) ...
- Setting up librdkit1 (202203.2-1) ...
- Setting up python3 (3.10.4-1) ...
- running python rtupdate hooks for python3.10...
- running python post-rtupdate hooks for python3.10...
- Setting up librdkit-dev (202203.2-1) ...
- Setting up python3-pkg-resources (59.6.0-1.2) ...
- Setting up python3-numpy (1:1.21.5-1) ...
- Setting up python3-rdkit (202203.2-1) ...
- Processing triggers for libc-bin (2.33-7) ...
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
Processing 2/3: [conf-rdkit: sh]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "sh" "-c" "c++ test.cpp -o test -I/usr/include/rdkit -lRDKitRDGeneral -DSWIG || c++ test.cpp -o test -I/usr/include/rdkit -lRDGeneral -DSWIG" (CWD=/home/opam/.opam/4.07/.opam-switch/build/conf-rdkit.1)
Processing 2/3: [conf-rdkit: ./test]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "./test" (CWD=/home/opam/.opam/4.07/.opam-switch/build/conf-rdkit.1)
- 2022.03.2
-> compiled conf-rdkit.1
-> installed conf-rdkit.1
Done.
# Run eval $(opam env) to update the current shell environment
2022-05-01 14:18.01 ---> saved as "29d44336b9253de49f8691db7099cc291795d41eeb7a1fb27b58b06f6e63333b"
Job succeeded
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