Building on c2-3.equinix.ci.dev
(from ocaml/opam:debian-unstable@sha256:351ef2434170dd736677f66ceb28e20fa1649b37428cad0800bdc36fe504db4b)
Unable to find image 'ocaml/opam:debian-unstable@sha256:351ef2434170dd736677f66ceb28e20fa1649b37428cad0800bdc36fe504db4b' locally
docker.io/ocaml/opam@sha256:351ef2434170dd736677f66ceb28e20fa1649b37428cad0800bdc36fe504db4b: Pulling from ocaml/opam
8d5d1d92353b: Pulling fs layer
8d5d1d92353b: Verifying Checksum
8d5d1d92353b: Download complete
8d5d1d92353b: Pull complete
Digest: sha256:351ef2434170dd736677f66ceb28e20fa1649b37428cad0800bdc36fe504db4b
Status: Downloaded newer image for ocaml/opam@sha256:351ef2434170dd736677f66ceb28e20fa1649b37428cad0800bdc36fe504db4b
2023-09-03 07:17.15 ---> using "ff03b32e0a6cf2ce303c7046b6adb41cde48e369e8bae8ff1d650232e0c267e3" from cache
/: (user (uid 1000) (gid 1000))
/: (env OPAMPRECISETRACKING 1)
/: (env OPAMUTF8 never)
/: (env OPAMEXTERNALSOLVER builtin-0install)
/: (env OPAMCRITERIA +removed)
/: (run (shell "sudo ln -f /usr/bin/opam-dev /usr/bin/opam"))
2023-09-03 07:17.15 ---> using "1138af94d7134ceab8bd43b6ae4c799e3ce9c890c8eeb0d38491a14c994f0421" from cache
/: (run (network host)
(shell "rm -rf ~/opam-repository && git clone -q 'https://github.com/ocaml/opam-repository' ~/opam-repository && git -C ~/opam-repository checkout -q 1d9d333b7333bbe4a1d72abc88e6eb710cc7adde"))
2023-09-03 07:17.15 ---> using "2d26af65da9ec45afad964d884cc9eeea2c9b22bbea5f6ede1fbcaf9f4ebf0da" from cache
/: (run (shell "rm -rf ~/.opam && opam init -ya --bare --config ~/.opamrc-sandbox ~/opam-repository"))
Configuring from /home/opam/.opamrc-sandbox, then /home/opam/.opamrc, and finally from built-in defaults.
Checking for available remotes: rsync and local, git.
- you won't be able to use mercurial repositories unless you install the hg command on your system.
- you won't be able to use darcs repositories unless you install the darcs command on your system.
<><> Fetching repository information ><><><><><><><><><><><><><><><><><><><><><>
[default] Initialised
User configuration:
~/.profile is already up-to-date.
[NOTE] Make sure that ~/.profile is well sourced in your ~/.bashrc.
2023-09-03 07:17.15 ---> using "5c7b61dbc93dd0912b34e03bcd8c3697eb78d56e0697555bb7ed6422c07d439a" from cache
/: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam switch create --repositories=default '5.1' '5.1.0~rc1'"))
<><> Installing new switch packages <><><><><><><><><><><><><><><><><><><><><><>
Switch invariant: ["ocaml-base-compiler" {= "5.1.0~rc1"}]
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> installed base-bigarray.base
-> installed base-threads.base
-> installed base-unix.base
-> installed ocaml-options-vanilla.1
-> retrieved ocaml-base-compiler.5.1.0~rc1 (https://github.com/ocaml/ocaml/archive/5.1.0-rc1.tar.gz)
-> installed ocaml-base-compiler.5.1.0~rc1
-> installed ocaml-config.3
-> installed ocaml.5.1.0
-> installed base-domains.base
-> installed base-nnp.base
Done.
# Run eval $(opam env --switch=5.1) to update the current shell environment
2023-09-03 07:17.15 ---> using "8ed93a5d495b2cdb8285a4783fb42796a80138d2b6610df228699b8f54f7798e" from cache
/: (run (network host)
(shell "opam update --depexts"))
+ /usr/bin/sudo "apt-get" "update"
- Get:1 http://deb.debian.org/debian unstable InRelease [210 kB]
- Get:2 http://deb.debian.org/debian unstable/main amd64 Packages.diff/Index [63.6 kB]
- Get:3 http://deb.debian.org/debian unstable/main amd64 Packages T-2023-09-02-1419.37-F-2023-08-24-0819.20.pdiff [534 kB]
- Get:3 http://deb.debian.org/debian unstable/main amd64 Packages T-2023-09-02-1419.37-F-2023-08-24-0819.20.pdiff [534 kB]
- Fetched 808 kB in 2s (435 kB/s)
- Reading package lists...
-
2023-09-03 07:17.15 ---> using "9e85644c8c572d840ebd723e97846d6596714c413c38e2dbb45af7ef3d99172c" from cache
/: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "\
\nopam remove -y \"orrandomForest.2.0.1\"\
\nopam install -vy \"orrandomForest.2.0.1\"\
\nres=$?\
\nif [ $res = 31 ]; then\
\n if opam show -f x-ci-accept-failures: \"orrandomForest.2.0.1\" | grep -q '\"debian-unstable\"'; then\
\n echo \"This package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\"\
\n exit 69\
\n fi\
\nfi\
\n\
\n\
\nexit $res\
\n"))
[NOTE] orrandomForest.2.0.1 is not installed.
Nothing to do.
The following actions will be performed:
=== install 4 packages
- install conf-r 1.0.0 [required by orrandomForest]
- install dolog 6.0.0 [required by orrandomForest]
- install dune 3.10.0 [required by orrandomForest]
- install orrandomForest 2.0.1
The following system packages will first need to be installed:
r-base-core
<><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><>
opam believes some required external dependencies are missing. opam can:
> 1. Run apt-get to install them (may need root/sudo access)
2. Display the recommended apt-get command and wait while you run it manually (e.g. in another terminal)
3. Continue anyway, and, upon success, permanently register that this external dependency is present, but not detectable
4. Abort the installation
[1/2/3/4] 1
+ /usr/bin/sudo "apt-get" "install" "-qq" "-yy" "r-base-core"
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- Setting up libx11-xcb1:amd64 (2:1.8.6-1) ...
- Setting up libpciaccess0:amd64 (0.17-2) ...
- Setting up fontconfig (2.14.2-4) ...
- Regenerating fonts cache...
- done.
- Setting up libapparmor1:amd64 (3.0.12-1) ...
- Setting up libtie-ixhash-perl (1.23-4) ...
- Setting up libicu72:amd64 (72.1-3) ...
- Setting up libxcb-xfixes0:amd64 (1.15-1) ...
- Setting up r-doc-html (4.3.1-4) ...
- Setting up libxi6:amd64 (2:1.8-1+b1) ...
- Setting up libfont-afm-perl (1.20-4) ...
- Setting up libxrender1:amd64 (1:0.9.10-1.1) ...
- Setting up libdatrie1:amd64 (0.2.13-2+b1) ...
- Setting up xdg-user-dirs (0.18-1) ...
- Setting up libpng-tools (1.6.40-1) ...
- Setting up libxcb-render0:amd64 (1.15-1) ...
- Setting up libclone-perl:amd64 (0.46-1) ...
- Setting up libglib2.0-0:amd64 (2.77.2-1) ...
- No schema files found: doing nothing.
- Setting up libglvnd0:amd64 (1.6.0-1) ...
- Setting up libio-stringy-perl (2.111-3) ...
- Setting up libhtml-tagset-perl (3.20-6) ...
- Setting up libauthen-sasl-perl (2.1600-3) ...
- Setting up libxcb-glx0:amd64 (1.15-1) ...
- Setting up liblwp-mediatypes-perl (6.04-2) ...
- Setting up libxcb-shape0:amd64 (1.15-1) ...
- Setting up x11-common (1:7.7+23) ...
- invoke-rc.d: could not determine current runlevel
- invoke-rc.d: policy-rc.d denied execution of restart.
- Setting up libtry-tiny-perl (0.31-2) ...
- Setting up libsensors-config (1:3.6.0-8) ...
- Setting up libxxf86dga1:amd64 (2:1.1.5-1) ...
- Setting up perl-openssl-defaults:amd64 (7+b1) ...
- Setting up libencode-locale-perl (1.05-3) ...
- Setting up libxcb-shm0:amd64 (1.15-1) ...
- Setting up libcairo2:amd64 (1.16.0-7) ...
- Setting up libpcre2-16-0:amd64 (10.42-4) ...
- Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ...
- Setting up libxcb-present0:amd64 (1.15-1) ...
- Setting up zip (3.0-13) ...
- Setting up libfontenc1:amd64 (1:1.1.4-1) ...
- Setting up libz3-4:amd64 (4.8.12-3.1) ...
- Setting up libpcre2-32-0:amd64 (10.42-4) ...
- Setting up libblas3:amd64 (3.11.0-2) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
- Setting up libglib2.0-data (2.77.2-1) ...
- Setting up libpkgconf3:amd64 (1.8.1-1) ...
- Setting up libgles2:amd64 (1.6.0-1) ...
- Setting up libdata-dump-perl (1.25-1) ...
- Setting up libjpeg62-turbo-dev:amd64 (1:2.1.5-2) ...
- Setting up libxfixes3:amd64 (1:6.0.0-2) ...
- Setting up libxcb-sync1:amd64 (1.15-1) ...
- Setting up libipc-system-simple-perl (1.30-2) ...
- Setting up libxml-xpathengine-perl (0.14-2) ...
- Setting up libncurses6:amd64 (6.4+20230625-2) ...
- Setting up libdbus-1-3:amd64 (1.14.10-1) ...
- Setting up libio-compress-brotli-perl (0.004001-2) ...
- Setting up xz-utils (5.4.4-0.1) ...
- Setting up libfribidi0:amd64 (1.0.13-3) ...
- Setting up libxinerama1:amd64 (2:1.1.4-3) ...
- Setting up libxv1:amd64 (2:1.0.11-1.1) ...
- Setting up libio-html-perl (1.004-3) ...
- Setting up libxrandr2:amd64 (2:1.5.2-2+b1) ...
- Setting up libtcl8.6:amd64 (8.6.13+dfsg-2) ...
- Setting up icu-devtools (72.1-3) ...
- Setting up pkgconf-bin (1.8.1-1) ...
- Setting up libsensors5:amd64 (1:3.6.0-8) ...
- Setting up libglapi-mesa:amd64 (23.1.6-1) ...
- Setting up libgfortran5:amd64 (13.2.0-2) ...
- Setting up libtimedate-perl (2.3300-2) ...
- Setting up liblzma-dev:amd64 (5.4.4-0.1) ...
- Setting up libxcb-dri2-0:amd64 (1.15-1) ...
- Setting up zlib1g-dev:amd64 (1:1.2.13.dfsg-3) ...
- Setting up libpcre2-posix3:amd64 (10.42-4) ...
- Setting up sensible-utils (0.0.20) ...
- Setting up libxshmfence1:amd64 (1.3-1) ...
- Setting up libxcb-randr0:amd64 (1.15-1) ...
- Setting up dbus-session-bus-common (1.14.10-1) ...
- Setting up libharfbuzz0b:amd64 (8.0.1-1) ...
- Setting up libthai-data (0.1.29-1) ...
- Setting up libxss1:amd64 (1:1.2.3-1) ...
- Setting up libxkbfile1:amd64 (1:1.1.0-1) ...
- Setting up dbus-system-bus-common (1.14.10-1) ...
- Setting up libgfortran-13-dev:amd64 (13.2.0-2) ...
- Setting up libdrm-common (2.4.115-1) ...
- Setting up libelf1:amd64 (0.189-4) ...
- Setting up libxcomposite1:amd64 (1:0.4.5-1) ...
- Setting up libicu-dev:amd64 (72.1-3) ...
- Setting up libxml2:amd64 (2.9.14+dfsg-1.3) ...
- Setting up xdg-utils (1.1.3-4.1) ...
- update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
- Setting up liburi-perl (5.19-2) ...
- Setting up dbus-bin (1.14.10-1) ...
- Setting up libx11-protocol-perl (0.56-9) ...
- Setting up libblas-dev:amd64 (3.11.0-2) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode
- Setting up libbz2-dev:amd64 (1.0.8-5+b1) ...
- Setting up libwayland-client0:amd64 (1.22.0-2) ...
- Setting up libnet-ssleay-perl:amd64 (1.92-2+b1) ...
- Setting up libice6:amd64 (2:1.0.10-1) ...
- Setting up libhttp-date-perl (6.05-2) ...
- Setting up liblapack3:amd64 (3.11.0-2) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
- Setting up libxft2:amd64 (2.3.6-1) ...
- Setting up libncurses-dev:amd64 (6.4+20230625-2) ...
- Setting up libfile-basedir-perl (0.09-2) ...
- Setting up libfile-listing-perl (6.15-1) ...
- Setting up libpcre2-dev:amd64 (10.42-4) ...
- Setting up libxtst6:amd64 (2:1.2.3-1.1) ...
- Setting up libtk8.6:amd64 (8.6.13-2) ...
- Setting up libxcursor1:amd64 (1:1.2.1-1) ...
- Setting up libpng-dev:amd64 (1.6.40-1) ...
- Setting up libjpeg-dev:amd64 (1:2.1.5-2) ...
- Setting up libnet-http-perl (6.22-1) ...
- Setting up dbus-daemon (1.14.10-1) ...
- Setting up libreadline-dev:amd64 (8.2-1.3) ...
- Setting up pkgconf:amd64 (1.8.1-1) ...
- Setting up libthai0:amd64 (0.1.29-1) ...
- Setting up gfortran-13 (13.2.0-2) ...
- Setting up dbus (1.14.10-1) ...
- invoke-rc.d: could not determine current runlevel
- invoke-rc.d: policy-rc.d denied execution of start.
- Setting up shared-mime-info (2.2-1) ...
- Setting up liblapack-dev:amd64 (3.11.0-2) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode
- Setting up pkg-config:amd64 (1.8.1-1) ...
- Setting up ucf (3.0043+nmu1) ...
- Setting up libfile-desktopentry-perl (0.22-3) ...
- Setting up libwww-robotrules-perl (6.02-1) ...
- Setting up libdrm2:amd64 (2.4.115-1) ...
- Setting up libhtml-parser-perl:amd64 (3.81-1) ...
- Setting up libllvm15:amd64 (1:15.0.7-8) ...
- Setting up libsm6:amd64 (2:1.2.3-1) ...
- Setting up libio-socket-ssl-perl (2.083-1) ...
- Setting up libhttp-message-perl (6.44-2) ...
- Setting up libdrm-amdgpu1:amd64 (2.4.115-1) ...
- Setting up libhtml-form-perl (6.11-1) ...
- Setting up libfile-mimeinfo-perl (0.33-1) ...
- Setting up libpaper1:amd64 (1.1.29) ...
-
- Creating config file /etc/papersize with new version
- Setting up libhttp-negotiate-perl (6.01-2) ...
- Setting up libdrm-nouveau2:amd64 (2.4.115-1) ...
- Setting up libgbm1:amd64 (23.1.6-1) ...
- Setting up libhttp-cookies-perl (6.10-1) ...
- Setting up libdrm-radeon1:amd64 (2.4.115-1) ...
- Setting up libhtml-tree-perl (5.07-3) ...
- Setting up libpango-1.0-0:amd64 (1.51.0+ds-2) ...
- Setting up libdrm-intel1:amd64 (2.4.115-1) ...
- Setting up libgl1-mesa-dri:amd64 (23.1.6-1) ...
- Setting up libhtml-format-perl (2.16-2) ...
- Setting up libpaper-utils (1.1.29) ...
- Setting up gfortran (4:13.2.0-1) ...
- update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
- update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
- Setting up libegl-mesa0:amd64 (23.1.6-1) ...
- Setting up libnet-smtp-ssl-perl (1.04-2) ...
- Setting up libmailtools-perl (2.21-2) ...
- Setting up libxt6:amd64 (1:1.2.1-1.1) ...
- Setting up libhttp-daemon-perl (6.16-1) ...
- Setting up libegl1:amd64 (1.6.0-1) ...
- Setting up libpangoft2-1.0-0:amd64 (1.51.0+ds-2) ...
- Setting up libpangocairo-1.0-0:amd64 (1.51.0+ds-2) ...
- Setting up libxmu6:amd64 (2:1.1.3-3) ...
- Setting up libglx-mesa0:amd64 (23.1.6-1) ...
- Setting up libglx0:amd64 (1.6.0-1) ...
- Setting up libxaw7:amd64 (2:1.0.14-1) ...
- Setting up x11-xserver-utils (7.7+9+b1) ...
- Setting up libgl1:amd64 (1.6.0-1) ...
- Setting up r-base-core (4.3.1-4) ...
-
- Creating config file /etc/R/Renviron with new version
- Setting up r-cran-lattice (0.21-8-2) ...
- Setting up r-cran-nlme (3.1.163-1) ...
- Setting up zutty (0.14.6.20230701+dfsg1-2) ...
- update-alternatives: using /usr/bin/zutty to provide /usr/bin/x-terminal-emulator (x-terminal-emulator) in auto mode
- Setting up r-cran-cluster (2.1.4-1) ...
- Setting up x11-utils (7.7+5) ...
- Setting up r-cran-nnet (7.3-19-2) ...
- Setting up r-cran-codetools (0.2-19-1) ...
- Setting up r-cran-boot (1.3-28.1-1) ...
- Setting up r-base-dev (4.3.1-4) ...
- Setting up r-cran-spatial (7.3-17-1) ...
- Setting up r-cran-mass (7.3-60-2) ...
- Setting up r-cran-foreign (0.8.84-1) ...
- Setting up r-cran-matrix (1.6-1-1) ...
- Setting up r-cran-kernsmooth (2.23-22-1) ...
- Setting up r-cran-mgcv (1.9-0-1) ...
- Setting up r-cran-class (7.3-22-2) ...
- Setting up r-cran-survival (3.5-7-1) ...
- Setting up r-cran-rpart (4.1.19-1) ...
- Setting up r-recommended (4.3.1-4) ...
- Setting up liblwp-protocol-https-perl (6.11-1) ...
- Setting up libwww-perl (6.72-1) ...
- Setting up libxml-parser-perl (2.46-4) ...
- Setting up libxml-twig-perl (1:3.52-2) ...
- Setting up libnet-dbus-perl (1.2.0-2) ...
- Processing triggers for libc-bin (2.37-7) ...
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
Processing 2/12:
Processing 3/12:
Processing 4/12: [orrandomForest.2.0.1: http]
Processing 5/12: [orrandomForest.2.0.1: http] [conf-r: R CMD]
-> retrieved dolog.6.0.0 (cached)
Processing 5/12: [conf-r: R CMD]
-> retrieved orrandomForest.2.0.1 (https://github.com/UnixJunkie/orrandomForest/archive/v2.0.1.tar.gz)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "R" "CMD" "BATCH" "check.r" (CWD=/home/opam/.opam/5.1/.opam-switch/build/conf-r.1.0.0)
-> compiled conf-r.1.0.0
Processing 5/12:
-> installed conf-r.1.0.0
Processing 6/12:
-> retrieved dune.3.10.0 (cached)
Processing 7/12: [dune: ocaml 47]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "ocaml" "boot/bootstrap.ml" "-j" "47" (CWD=/home/opam/.opam/5.1/.opam-switch/build/dune.3.10.0)
- ocamlc -output-complete-exe -w -24 -g -o .duneboot.exe -I boot -I +unix unix.cma boot/libs.ml boot/duneboot.ml
- ./.duneboot.exe -j 47
-
Processing 7/12: [dune: ./_boot/dune.exe build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "./_boot/dune.exe" "build" "dune.install" "--release" "--profile" "dune-bootstrap" "-j" "47" (CWD=/home/opam/.opam/5.1/.opam-switch/build/dune.3.10.0)
-> compiled dune.3.10.0
-> installed dune.3.10.0
Processing 9/12: [dolog: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "dolog" "-j" "47" (CWD=/home/opam/.opam/5.1/.opam-switch/build/dolog.6.0.0)
-> compiled dolog.6.0.0
-> installed dolog.6.0.0
Processing 11/12: [orrandomForest: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "orrandomForest" "-j" "47" (CWD=/home/opam/.opam/5.1/.opam-switch/build/orrandomForest.2.0.1)
-> compiled orrandomForest.2.0.1
Processing 12/12: [orrandomForest: R CMD]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "R" "CMD" "BATCH" "install_randomForest.r" (CWD=/home/opam/.opam/5.1/.opam-switch/build/orrandomForest.2.0.1)
[ERROR] The installation of orrandomForest failed at "R CMD BATCH install_randomForest.r".
#=== ERROR while installing orrandomForest.2.0.1 ==============================#
# context 2.2.0~alpha3~dev | linux/x86_64 | ocaml-base-compiler.5.1.0~rc1 | file:///home/opam/opam-repository
# path ~/.opam/5.1/.opam-switch/build/orrandomForest.2.0.1
# command ~/.opam/opam-init/hooks/sandbox.sh install R CMD BATCH install_randomForest.r
# exit-code 1
# env-file ~/.opam/log/orrandomForest-9-be72f2.env
# output-file ~/.opam/log/orrandomForest-9-be72f2.out
<><> Error report <><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><>
+- The following actions failed
| - install orrandomForest 2.0.1
+-
+- The following changes have been performed
| - install conf-r 1.0.0
| - install dolog 6.0.0
| - install dune 3.10.0
+-
<><> orrandomForest.2.0.1 troubleshooting <><><><><><><><><><><><><><><><><><><>
=> Please interact with R to install needed things in user-space:
R
install.packages('Marix', repos='http://cran.r-project.org')
install.packages('randomForest', repos='http://cran.r-project.org')
# Run eval $(opam env) to update the current shell environment
The former state can be restored with:
/usr/bin/opam switch import "/home/opam/.opam/5.1/.opam-switch/backup/state-20230903071733.export"
'opam install -vy orrandomForest.2.0.1' failed.
This package failed and has been disabled for CI using the 'x-ci-accept-failures' field.
"/bin/bash" "-c" "
opam remove -y "orrandomForest.2.0.1"
opam install -vy "orrandomForest.2.0.1"
res=$?
if [ $res = 31 ]; then
if opam show -f x-ci-accept-failures: "orrandomForest.2.0.1" | grep -q '"debian-unstable"'; then
echo "This package failed and has been disabled for CI using the 'x-ci-accept-failures' field."
exit 69
fi
fi
exit $res
" failed with exit status 69
Failed: Build failed
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