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Building on toxis.caelum.ci.dev

(from ocaml/opam:debian-unstable)
2025-01-15 18:11.07 ---> using "0acd5aeaa8f7bc314514d9795d14a7f12ec72a6a5b11c5904350189734c6859b" from cache

/: (user (uid 1000) (gid 1000))

/: (env OPAMPRECISETRACKING 1)

/: (env OPAMUTF8 never)

/: (env OPAMEXTERNALSOLVER builtin-0install)

/: (env OPAMCRITERIA +removed)

/: (env CI true)

/: (env OPAM_HEALTH_CHECK_CI true)

/: (run (shell "sudo ln -f /usr/bin/opam-dev /usr/bin/opam"))
2025-01-15 18:11.07 ---> using "40df4fa4cdfc68a5fa7a326047e82a7adc5df52b8059d4a7b745bdd50aad56e7" from cache

/: (run (network host)
        (shell "rm -rf ~/opam-repository && git clone -q 'https://github.com/ocaml/opam-repository' ~/opam-repository && git -C ~/opam-repository checkout -q 451b1e526ccb27dc66364a851b27fbf7ccfbc2f2"))
2025-01-15 18:11.07 ---> using "52625e8a37d6974e498c46c5b73987a5de23eb753980981e64630dc695fbe3b3" from cache

/: (run (shell "rm -rf ~/.opam && opam init -ya --bare --config ~/.opamrc-sandbox ~/opam-repository"))
Configuring from /home/opam/.opamrc-sandbox, then /home/opam/.opamrc, and finally from built-in defaults.
Checking for available remotes: rsync and local, git.
  - you won't be able to use mercurial repositories unless you install the hg command on your system.
  - you won't be able to use darcs repositories unless you install the darcs command on your system.


<><> Fetching repository information ><><><><><><><><><><><><><><><><><><><><><>
[default] Initialised
default (at file:///home/opam/opam-repository): 
    [WARNING] opam is out-of-date. Please consider updating it (https://opam.ocaml.org/doc/Install.html)


User configuration:
  ~/.profile is already up-to-date.
[NOTE] Make sure that ~/.profile is well sourced in your ~/.bashrc.

2025-01-15 18:11.07 ---> using "bf0993b7e440c7679323e43a556b3a337fb81df454233420043ea0f043d5139e" from cache

/: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
        (network host)
        (shell "opam switch create --repositories=default '5.1' '5.1.0'"))

<><> Installing new switch packages <><><><><><><><><><><><><><><><><><><><><><>
Switch invariant: ["ocaml-base-compiler" {= "5.1.0"} | "ocaml-system" {= "5.1.0"}]

<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved ocaml-config.3  (cached)
-> installed base-bigarray.base
-> installed base-threads.base
-> installed base-unix.base
-> installed host-arch-x86_64.1
-> installed host-system-other.1
-> installed ocaml-options-vanilla.1
-> retrieved ocaml-base-compiler.5.1.0  (cached)
-> installed ocaml-base-compiler.5.1.0
-> installed ocaml-config.3
-> installed ocaml.5.1.0
-> installed base-domains.base
-> installed base-nnp.base
Done.
# Run eval $(opam env --switch=5.1) to update the current shell environment
2025-01-15 18:11.07 ---> using "57da3f0b69e850a472f43036af1ba9d6c485174a0ff99f82b6070eaec4a6b835" from cache

/: (run (network host)
        (shell "opam update --depexts"))
+ /usr/bin/sudo "apt-get" "update"
- Get:1 http://deb.debian.org/debian unstable InRelease [205 kB]
- Get:2 http://deb.debian.org/debian unstable/main amd64 Packages.diff/Index [63.6 kB]
- Ign:2 http://deb.debian.org/debian unstable/main amd64 Packages.diff/Index
- Get:3 http://deb.debian.org/debian unstable/main amd64 Packages [9979 kB]
- Fetched 10.2 MB in 3s (3991 kB/s)
- Reading package lists...
- 
2025-01-15 18:11.07 ---> using "85b87af1dcb47771a79111e66673142733868c4fe1587b87f373ff22bc805e9d" from cache

/: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
        (network host)
        (shell  "\
               \nopam remove -y \"oranger.4.3.5\"\
               \nopam install -vy \"oranger.4.3.5\"\
               \nres=$?\
               \nif [ $res = 31 ]; then\
               \n    if opam show -f x-ci-accept-failures: \"oranger.4.3.5\" | grep -q '\"debian-unstable\"'; then\
               \n        echo \"This package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\"\
               \n        exit 69\
               \n    fi\
               \nfi\
               \n\
               \n\
               \nexit $res\
               \n"))
Nothing to do.
[NOTE] oranger.4.3.5 is not installed.

The following actions will be performed:
=== install 36 packages
  - install base-bytes          base     [required by dokeysto]
  - install batteries           3.9.0    [required by oranger]
  - install bst                 7.1.0    [required by molenc]
  - install camlp-streams       5.0.1    [required by batteries]
  - install conf-autoconf       0.2      [required by cpu, stdcompat]
  - install conf-cmake          1        [required by oranger]
  - install conf-graphviz       0.1      [required by molenc]
  - install conf-python-3       9.0.0    [required by molenc]
  - install conf-rdkit          1        [required by molenc]
  - install conf-which          1        [required by conf-graphviz]
  - install cpm                 12.2.0   [required by oranger]
  - install cpu                 2.0.0    [required by parany]
  - install csexp               1.5.2    [required by dune-configurator]
  - install dokeysto            4.0.1    [required by molenc]
  - install dolog               6.0.0    [required by oranger]
  - install dune                3.17.1   [required by oranger]
  - install dune-configurator   3.17.1   [required by extunix]
  - install extunix             0.4.3    [required by dokeysto]
  - install line_oriented       1.3.0    [required by oranger]
  - install minicli             5.0.2    [required by oranger]
  - install molenc              17.0.1   [required by oranger]
  - install num                 1.5-1    [required by batteries]
  - install ocaml-compiler-libs v0.12.4  [required by ppxlib]
  - install ocamlfind           1.9.6    [required by batteries]
  - install ocamlgraph          2.1.0    [required by molenc]
  - install oranger             4.3.5
  - install parany              14.0.1   [required by oranger]
  - install ppx_derivers        1.2.1    [required by ppxlib]
  - install ppxlib              0.34.0   [required by extunix]
  - install pyml                20231101 [required by molenc]
  - install re                  1.12.0   [required by oranger]
  - install seq                 base     [required by re]
  - install sexplib0            v0.17.0  [required by ppxlib]
  - install stdcompat           19       [required by pyml]
  - install stdlib-shims        0.3.0    [required by ocamlgraph]
  - install vector3             1.0.0    [required by molenc]

The following system packages will first need to be installed:
    autoconf cmake graphviz librdkit-dev python3 python3-rdkit

<><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><>

opam believes some required external dependencies are missing. opam can:
> 1. Run apt-get to install them (may need root/sudo access)
  2. Display the recommended apt-get command and wait while you run it manually (e.g. in another terminal)
  3. Continue anyway, and, upon success, permanently register that this external dependency is present, but not detectable
  4. Abort the installation

[1/2/3/4] 1

+ /usr/bin/sudo "apt-get" "install" "-qq" "-yy" "autoconf" "cmake" "graphviz" "librdkit-dev" "python3" "python3-rdkit"
- debconf: delaying package configuration, since apt-utils is not installed
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- Preparing to unpack .../base-files_13.6_amd64.deb ...
- Unpacking base-files (13.6) over (13) ...
- Setting up base-files (13.6) ...
- Updating /etc/profile to current default.
- Updating /root/.profile to current default.
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- Preparing to unpack .../libc-devtools_2.40-5_amd64.deb ...
- Unpacking libc-devtools (2.40-5) over (2.37-13) ...
- Preparing to unpack .../libc6-dev_2.40-5_amd64.deb ...
- Unpacking libc6-dev:amd64 (2.40-5) over (2.37-13) ...
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- Unpacking libc-dev-bin (2.40-5) over (2.37-13) ...
- Preparing to unpack .../libc6_2.40-5_amd64.deb ...
- Checking for services that may need to be restarted...
- Checking init scripts...
- Unpacking libc6:amd64 (2.40-5) over (2.37-13) ...
- Setting up libc6:amd64 (2.40-5) ...
- Checking for services that may need to be restarted...
- Checking init scripts...
- Nothing to restart.
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- Preparing to unpack .../libc-bin_2.40-5_amd64.deb ...
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- Preparing to unpack .../gcc-14-base_14.2.0-13_amd64.deb ...
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- Preparing to unpack .../libgcc-s1_14.2.0-13_amd64.deb ...
- Unpacking libgcc-s1:amd64 (14.2.0-13) over (13.2.0-9) ...
- Setting up libgcc-s1:amd64 (14.2.0-13) ...
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- Preparing to unpack .../bsdutils_1%3a2.40.4-1_amd64.deb ...
- Unpacking bsdutils (1:2.40.4-1) over (1:2.39.3-6) ...
- Setting up bsdutils (1:2.40.4-1) ...
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- Preparing to unpack .../login.defs_1%3a4.16.0-7_all.deb ...
- Unpacking login.defs (1:4.16.0-7) ...
- Replacing files in old package login (1:4.13+dfsg1-3+b1) ...
- Setting up login.defs (1:4.16.0-7) ...
- Installing new version of config file /etc/login.defs ...
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- Preparing to unpack .../login_1%3a4.16.0-2+really2.40.4-1_amd64.deb ...
- Unpacking login (1:4.16.0-2+really2.40.4-1) over (1:4.13+dfsg1-3+b1) ...
- Setting up login (1:4.16.0-2+really2.40.4-1) ...
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- Preparing to unpack .../libblkid1_2.40.4-1_amd64.deb ...
- Unpacking libblkid1:amd64 (2.40.4-1) over (2.39.3-6) ...
- Setting up libblkid1:amd64 (2.40.4-1) ...
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- Preparing to unpack .../libmount1_2.40.4-1_amd64.deb ...
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- Preparing to unpack .../libsmartcols1_2.40.4-1_amd64.deb ...
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- Setting up libsmartcols1:amd64 (2.40.4-1) ...
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- Preparing to unpack .../libuuid1_2.40.4-1_amd64.deb ...
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- Setting up libuuid1:amd64 (2.40.4-1) ...
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- Preparing to unpack .../util-linux_2.40.4-1_amd64.deb ...
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- Setting up util-linux (2.40.4-1) ...
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- Preparing to unpack .../base-passwd_3.6.6_amd64.deb ...
- Unpacking base-passwd (3.6.6) over (3.6.3) ...
- Setting up base-passwd (3.6.6) ...
- dpkg: libhogweed6:amd64: dependency problems, but removing anyway as you requested:
-  librtmp1:amd64 depends on libhogweed6.
-  libgnutls30:amd64 depends on libhogweed6 (>= 3.6).
- 
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- Removing libhogweed6:amd64 (3.9.1-2) ...
- dpkg: libnettle8:amd64: dependency problems, but removing anyway as you requested:
-  librtmp1:amd64 depends on libnettle8.
-  libgnutls30:amd64 depends on libnettle8 (>= 3.9~).
-  libcurl3-gnutls:amd64 depends on libnettle8.
- 
- Removing libnettle8:amd64 (3.9.1-2) ...
- Selecting previously unselected package libnettle8t64:amd64.
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- Preparing to unpack .../libnettle8t64_3.10-1+b1_amd64.deb ...
- Unpacking libnettle8t64:amd64 (3.10-1+b1) ...
- Selecting previously unselected package libhogweed6t64:amd64.
- Preparing to unpack .../libhogweed6t64_3.10-1+b1_amd64.deb ...
- Unpacking libhogweed6t64:amd64 (3.10-1+b1) ...
- dpkg: libgnutls30:amd64: dependency problems, but removing anyway as you requested:
-  librtmp1:amd64 depends on libgnutls30 (>= 3.6.14).
-  libldap-2.5-0:amd64 depends on libgnutls30 (>= 3.8.2).
-  libcurl3-gnutls:amd64 depends on libgnutls30 (>= 3.8.2).
-  dirmngr depends on libgnutls30 (>= 3.8.1).
-  apt depends on libgnutls30 (>= 3.8.1).
- 
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- Preparing to unpack .../libgnutls30t64_3.8.8-2_amd64.deb ...
- Unpacking libgnutls30t64:amd64 (3.8.8-2) ...
- Selecting previously unselected package libnghttp3-9:amd64.
- Preparing to unpack .../libnghttp3-9_1.6.0-2_amd64.deb ...
- Unpacking libnghttp3-9:amd64 (1.6.0-2) ...
- Selecting previously unselected package libngtcp2-16:amd64.
- Preparing to unpack .../libngtcp2-16_1.9.1-1_amd64.deb ...
- Unpacking libngtcp2-16:amd64 (1.9.1-1) ...
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- Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64'
- Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64'
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- Setting up libuv1t64:amd64 (1.48.0-7) ...
- Setting up x11-common (1:7.7+23.2) ...
- invoke-rc.d: could not determine current runlevel
- invoke-rc.d: policy-rc.d denied execution of start.
- Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ...
- Setting up fonts-freefont-ttf (20211204+svn4273-2) ...
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- Setting up libgomp1:amd64 (14.2.0-13) ...
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- Setting up libnettle8t64:amd64 (3.10-1+b1) ...
- Setting up libboost-numpy1.83.0 (1.83.0-4) ...
- Setting up autotools-dev (20220109.1) ...
- Setting up libblas3:amd64 (3.12.0-4) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
- Setting up libglib2.0-data (2.82.4-2) ...
- Setting up libboost-iostreams1.83.0:amd64 (1.83.0-4) ...
- Setting up libjsoncpp26:amd64 (1.9.6-3) ...
- Setting up libpathplan4:amd64 (2.42.4-2+b2) ...
- Setting up libann0 (1.1.2+doc-9+b1) ...
- Setting up libfribidi0:amd64 (1.0.16-1) ...
- Setting up libquadmath0:amd64 (14.2.0-13) ...
- Setting up libpng16-16t64:amd64 (1.6.45-1) ...
- Setting up libatomic1:amd64 (14.2.0-13) ...
- Setting up libltdl7:amd64 (2.5.4-2) ...
- Setting up libgfortran5:amd64 (14.2.0-13) ...
- Setting up autoconf (2.72-3) ...
- Setting up libnghttp3-9:amd64 (1.6.0-2) ...
- Setting up libwebp7:amd64 (1.5.0-0.1) ...
- Setting up libubsan1:amd64 (14.2.0-13) ...
- Setting up libhogweed6t64:amd64 (3.10-1+b1) ...
- Setting up mount (2.40.4-1) ...
- Setting up libhwasan0:amd64 (14.2.0-13) ...
- Setting up libasan8:amd64 (14.2.0-13) ...
- Setting up fonts-liberation (1:2.1.5-3) ...
- Setting up libthai-data (0.1.29-2) ...
- Setting up libngtcp2-16:amd64 (1.9.1-1) ...
- Setting up cmake-data (3.31.3-1) ...
- Setting up librhash1:amd64 (1.4.5-1) ...
- Setting up libcdt5:amd64 (2.42.4-2+b2) ...
- Setting up libcgraph6:amd64 (2.42.4-2+b2) ...
- Setting up libfontconfig1:amd64 (2.15.0-2) ...
- Setting up libssh2-1t64:amd64 (1.11.1-1) ...
- Setting up libtsan2:amd64 (14.2.0-13) ...
- Setting up libcoordgen3:amd64 (3.0.2-1+b2) ...
- Setting up fonts-liberation-sans-narrow (1:1.07.6-4) ...
- Setting up libc-dev-bin (2.40-5) ...
- Setting up openssl (3.4.0-2) ...
- Installing new version of config file /etc/ssl/openssl.cnf ...
- Setting up libinchi1.07 (1.07.1+dfsg-6) ...
- Setting up readline-common (8.2-6) ...
- Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ...
- Setting up libcc1-0:amd64 (14.2.0-13) ...
- Setting up libxmuu1:amd64 (2:1.1.3-3+b4) ...
- Setting up liblsan0:amd64 (14.2.0-13) ...
- Setting up libitm1:amd64 (14.2.0-13) ...
- Setting up libc-devtools (2.40-5) ...
- Setting up libgnutls30t64:amd64 (3.8.8-2) ...
- Setting up automake (1:1.16.5-1.3) ...
- update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
- Setting up libice6:amd64 (2:1.1.1-1) ...
- Setting up fontconfig (2.15.0-2) ...
- Regenerating fonts cache... 
- done.
- Setting up liblapack3:amd64 (3.12.0-4) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
- Setting up libcurl4t64:amd64 (8.11.1-1) ...
- Setting up libcairo2:amd64 (1.18.2-2) ...
- Setting up libmaeparser1:amd64 (1.3.1-1+b2) ...
- Setting up libthai0:amd64 (0.1.29-2+b1) ...
- Setting up libglib2.0-0t64:amd64 (2.82.4-2) ...
- No schema files found: doing nothing.
- Setting up shared-mime-info (2.4-5+b1) ...
- Setting up libreadline8t64:amd64 (8.2-6) ...
- Setting up libgvpr2:amd64 (2.42.4-2+b2) ...
- Setting up libc6-dev:amd64 (2.40-5) ...
- Setting up libharfbuzz0b:amd64 (10.2.0-1) ...
- Setting up libgts-0.7-5t64:amd64 (0.7.6+darcs121130-5.2+b1) ...
- Setting up libsm6:amd64 (2:1.2.4-1) ...
- Setting up libarchive13t64:amd64 (3.7.4-1.1) ...
- Setting up libpython3.13-stdlib:amd64 (3.13.1-3) ...
- Setting up libngtcp2-crypto-gnutls8:amd64 (1.9.1-1) ...
- Setting up libpython3-stdlib:amd64 (3.13.1-2) ...
- Setting up libgts-bin (0.7.6+darcs121130-5.2+b1) ...
- Setting up librdkit1t64 (202409.2-3) ...
- Setting up python3.13 (3.13.1-3) ...
- Setting up libpango-1.0-0:amd64 (1.56.0-3) ...
- Setting up libcurl3t64-gnutls:amd64 (8.11.1-1) ...
- Setting up python3 (3.13.1-2) ...
- running python rtupdate hooks for python3.13...
- running python post-rtupdate hooks for python3.13...
- Setting up libxt6t64:amd64 (1:1.2.1-1.2+b2) ...
- Setting up librdkit-dev (202409.2-3) ...
- Setting up python3-numpy (1:1.26.4+ds-13) ...
- Setting up cmake (3.31.3-1) ...
- Setting up curl (8.11.1-1) ...
- Setting up libpangoft2-1.0-0:amd64 (1.56.0-3) ...
- Setting up libpangocairo-1.0-0:amd64 (1.56.0-3) ...
- Setting up libxmu6:amd64 (2:1.1.3-3+b4) ...
- Setting up libxaw7:amd64 (2:1.0.16-1) ...
- Setting up python3-rdkit (202409.2-3) ...
- Setting up libgvc6 (2.42.4-2+b2) ...
- Setting up graphviz (2.42.4-2+b2) ...
- Processing triggers for libc-bin (2.40-5) ...

<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
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Processing 15/107: [conf-autoconf: autoconf] [conf-cmake: sh configure.sh] [conf-python-3: python3 test.py] [conf-rdkit: sh]
Processing 16/107: [conf-autoconf: autoconf] [conf-cmake: sh configure.sh] [conf-python-3: python3 test.py] [conf-rdkit: sh] [conf-which: which which]
-> retrieved batteries.3.9.0  (cached)
Processing 17/107: [conf-autoconf: autoconf] [conf-cmake: sh configure.sh] [conf-python-3: python3 test.py] [conf-rdkit: sh] [conf-which: which which]
-> retrieved bst.7.1.0  (cached)
Processing 18/107: [conf-autoconf: autoconf] [conf-cmake: sh configure.sh] [conf-python-3: python3 test.py] [conf-rdkit: sh] [conf-which: which which]
-> retrieved cpm.12.2.0  (cached)
Processing 19/107: [conf-autoconf: autoconf] [conf-cmake: sh configure.sh] [conf-python-3: python3 test.py] [conf-rdkit: sh] [conf-which: which which]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "autoconf" "-V" (CWD=/home/opam/.opam/5.1/.opam-switch/build/conf-autoconf.0.2)
- autoconf (GNU Autoconf) 2.72
- Copyright (C) 2023 Free Software Foundation, Inc.
- License GPLv3+/Autoconf: GNU GPL version 3 or later
- <https://gnu.org/licenses/gpl.html>, <https://gnu.org/licenses/exceptions.html>
- This is free software: you are free to change and redistribute it.
- There is NO WARRANTY, to the extent permitted by law.
- 
- Written by David J. MacKenzie and Akim Demaille.
-> compiled  conf-autoconf.0.2
Processing 19/107: [conf-cmake: sh configure.sh] [conf-python-3: python3 test.py] [conf-rdkit: sh] [conf-which: which which]
-> installed conf-autoconf.0.2
Processing 20/107: [conf-cmake: sh configure.sh] [conf-python-3: python3 test.py] [conf-rdkit: sh] [conf-which: which which]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "sh" "-ex" "configure.sh" (CWD=/home/opam/.opam/5.1/.opam-switch/build/conf-cmake.1)
- + command -v cmake3
- + command -v cmake
- /usr/bin/cmake
- + cmake_cmd=cmake
- + echo cmd: "cmake"
-> compiled  conf-cmake.1
Processing 20/107: [conf-python-3: python3 test.py] [conf-rdkit: sh] [conf-which: which which]
-> installed conf-cmake.1
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+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "python3" "test.py" (CWD=/home/opam/.opam/5.1/.opam-switch/build/conf-python-3.9.0.0)
- python-3 OK
-> compiled  conf-python-3.9.0.0
Processing 21/107: [conf-rdkit: sh] [conf-which: which which]
-> installed conf-python-3.9.0.0
Processing 22/107: [conf-rdkit: sh] [conf-which: which which]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "sh" "-c" "c++ test.cpp -o test -I/usr/include/rdkit -lRDKitRDGeneral -DSWIG || c++ test.cpp -o test -I/usr/include/rdkit -lRDGeneral -DSWIG" (CWD=/home/opam/.opam/5.1/.opam-switch/build/conf-rdkit.1)
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+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "which" "which" (CWD=/home/opam/.opam/5.1/.opam-switch/build/conf-which.1)
- /usr/bin/which
-> compiled  conf-which.1
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-> installed conf-which.1
Processing 23/107: [conf-rdkit: ./test]
Processing 24/107: [conf-graphviz: which dot] [conf-rdkit: ./test]
-> retrieved cpu.2.0.0  (cached)
Processing 25/107: [conf-graphviz: which dot] [conf-rdkit: ./test]
-> retrieved csexp.1.5.2  (cached)
Processing 26/107: [conf-graphviz: which dot] [conf-rdkit: ./test]
-> retrieved dokeysto.4.0.1  (cached)
Processing 27/107: [conf-graphviz: which dot] [conf-rdkit: ./test]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "./test" (CWD=/home/opam/.opam/5.1/.opam-switch/build/conf-rdkit.1)
- 2024.09.2
-> compiled  conf-rdkit.1
Processing 27/107: [conf-graphviz: which dot]
-> installed conf-rdkit.1
Processing 28/107: [conf-graphviz: which dot]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "which" "dot" (CWD=/home/opam/.opam/5.1/.opam-switch/build/conf-graphviz.0.1)
- /usr/bin/dot
-> compiled  conf-graphviz.0.1
Processing 28/107:
-> installed conf-graphviz.0.1
Processing 29/107:
-> retrieved dolog.6.0.0  (cached)
Processing 30/107:
-> retrieved line_oriented.1.3.0  (cached)
Processing 31/107:
-> retrieved extunix.0.4.3  (cached)
Processing 32/107:
-> retrieved minicli.5.0.2  (cached)
Processing 33/107:
-> retrieved num.1.5-1  (cached)
Processing 34/107:
[num: patch] applying num-in-findlib-dir.patch
Processing 35/107: [num: patch]
-> retrieved ocaml-compiler-libs.v0.12.4  (cached)
Processing 36/107: [num: patch]
-> retrieved molenc.17.0.1  (cached)
Processing 37/107: [num: patch]
Processing 37/107: [num: make opam-modern]
-> retrieved ocamlfind.1.9.6  (cached)
Processing 38/107: [oranger.4.3.5: http] [num: make opam-modern]
[ocamlfind: patch] applying 0001-Harden-test-for-OCaml-5.patch
Processing 39/107: [oranger.4.3.5: http] [num: make opam-modern] [ocamlfind: patch]
Processing 39/107: [oranger.4.3.5: http] [num: make opam-modern] [ocamlfind: ./configure]
-> retrieved ocamlgraph.2.1.0  (cached)
Processing 40/107: [oranger.4.3.5: http] [num: make opam-modern] [ocamlfind: ./configure]
-> retrieved parany.14.0.1  (cached)
Processing 41/107: [oranger.4.3.5: http] [num: make opam-modern] [ocamlfind: ./configure]
-> retrieved ppx_derivers.1.2.1  (cached)
Processing 42/107: [oranger.4.3.5: http] [num: make opam-modern] [ocamlfind: ./configure]
Processing 42/107: [num: make opam-modern] [ocamlfind: ./configure]
-> retrieved oranger.4.3.5  (https://github.com/UnixJunkie/oranger/archive/v4.3.5.tar.gz)
Processing 43/107: [num: make opam-modern] [ocamlfind: ./configure]
-> retrieved pyml.20231101  (cached)
Processing 44/107: [num: make opam-modern] [ocamlfind: ./configure]
-> retrieved re.1.12.0  (cached)
-> retrieved seq.base  (cached)
Processing 45/107: [num: make opam-modern] [ocamlfind: ./configure]
Processing 46/107: [num: make opam-modern] [ocamlfind: ./configure]
Processing 47/107: [num: make opam-modern] [ocamlfind: ./configure]
-> installed seq.base
Processing 48/107: [num: make opam-modern] [ocamlfind: ./configure]
-> retrieved sexplib0.v0.17.0  (cached)
Processing 49/107: [num: make opam-modern] [ocamlfind: ./configure]
-> retrieved ppxlib.0.34.0  (cached)
Processing 50/107: [num: make opam-modern] [ocamlfind: ./configure]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "./configure" "-bindir" "/home/opam/.opam/5.1/bin" "-sitelib" "/home/opam/.opam/5.1/lib" "-mandir" "/home/opam/.opam/5.1/man" "-config" "/home/opam/.opam/5.1/lib/findlib.conf" "-no-custom" "-no-camlp4" (CWD=/home/opam/.opam/5.1/.opam-switch/build/ocamlfind.1.9.6)
- Welcome to findlib version 1.9.6
- Configuring core...
- Checking for #remove_directory...
- Testing threading model...
- systhread_supported: true
- Testing DLLs...
- Testing whether ppxopt can be supported...
- Checking for ocamlc -opaque...
- Checking for ocamlopt -g...
- Configuring libraries...
- unix: found (in +unix)
- dynlink: found (in +dynlink)
- bigarray: not present (possible since 4.08)
- compiler-libs: found
- dbm: not present (normal since 4.00)
- graphics: not present (normal since 4.09)
- num: not present (normal since 4.06)
- ocamlbuild: not present (normal since 4.03)
- ocamldoc: found (in +ocamldoc)
- raw_spacetime: not present (normal since 4.12)
- threads: found (in +threads)
- str: found (in +str)
- labltk: not present (normal since 4.02)
- native dynlink: found
- camlp4: disabled
- bytes: found, installing fake library
- Configuration for bytes written to site-lib-src/bytes/META
- Detecting compiler arguments: (extractor built) ok
- 
- About the OCAML core installation:
-     Standard library:      /home/opam/.opam/5.1/lib/ocaml
-     Binaries:              /home/opam/.opam/5.1/bin
-     Manual pages:          /home/opam/.opam/5.1/man
-     Multi-threading type:  posix
- The directory of site-specific packages will be
-     site-lib:              /home/opam/.opam/5.1/lib
- The configuration file is written to:
-     findlib config file:   /home/opam/.opam/5.1/lib/findlib.conf
- Software will be installed:
-     Libraries:             in <site-lib>/findlib
-     Binaries:              /home/opam/.opam/5.1/bin
-     Manual pages:          /home/opam/.opam/5.1/man
-     topfind script:        /home/opam/.opam/5.1/lib/ocaml
- Topfind ppxopt support:    yes
- Toolbox:                   no
- Link custom runtime:       no
- Need bytes compatibility:  no
- 
- Configuration has been written to Makefile.config
- 
- You can now do 'make all', and optionally 'make opt', to build ocamlfind.
Processing 50/107: [num: make opam-modern] [ocamlfind: make all]
-> retrieved stdcompat.19  (cached)
Processing 51/107: [num: make opam-modern] [ocamlfind: make all]
-> retrieved dune.3.17.1, dune-configurator.3.17.1  (cached)
Processing 52/107: [dune: ocaml 71] [num: make opam-modern] [ocamlfind: make all]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "make" "PROFILE=release" "opam-modern" (CWD=/home/opam/.opam/5.1/.opam-switch/build/num.1.5-1)
- make -C src all
- make[1]: Entering directory '/home/opam/.opam/5.1/.opam-switch/build/num.1.5-1/src'
- ocamlc -ccopt -DBNG_ARCH_amd64 -c bng.c
- ocamlc -ccopt -DBNG_ARCH_amd64 -c nat_stubs.c
- ocamlmklib -oc nums bng.o nat_stubs.o
- ocamlc -w +a-4-9-41-42-44-45-48  -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c int_misc.mli
- ocamlc -w +a-4-9-41-42-44-45-48  -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c int_misc.ml
- ocamlc -w +a-4-9-41-42-44-45-48  -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c nat.mli
- ocamlc -w +a-4-9-41-42-44-45-48  -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c nat.ml
- ocamlc -w +a-4-9-41-42-44-45-48  -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c big_int.mli
- ocamlc -w +a-4-9-41-42-44-45-48  -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c big_int.ml
- ocamlc -w +a-4-9-41-42-44-45-48  -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c arith_flags.mli
- ocamlc -w +a-4-9-41-42-44-45-48  -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c arith_flags.ml
- ocamlc -w +a-4-9-41-42-44-45-48  -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c ratio.mli
- ocamlc -w +a-4-9-41-42-44-45-48  -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c ratio.ml
- ocamlc -w +a-4-9-41-42-44-45-48  -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c num.mli
- ocamlc -w +a-4-9-41-42-44-45-48  -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c num.ml
- ocamlc -w +a-4-9-41-42-44-45-48  -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c arith_status.mli
- ocamlc -w +a-4-9-41-42-44-45-48  -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c arith_status.ml
- ocamlmklib -o nums -oc nums -linkall int_misc.cmo nat.cmo big_int.cmo arith_flags.cmo ratio.cmo num.cmo arith_status.cmo
- cp ../toplevel/num_top_printers.mli ../toplevel/num_top.mli ../toplevel/num_top_printers.ml ../toplevel/num_top.ml .
- ocamlc -w +a-4-9-41-42-44-45-48  -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c num_top_printers.mli
- ocamlc -w +a-4-9-41-42-44-45-48  -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c num_top_printers.ml
- ocamlc -w +a-4-9-41-42-44-45-48  -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c num_top.mli
- ocamlc -w +a-4-9-41-42-44-45-48  -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c num_top.ml
- ocamlc -w +a-4-9-41-42-44-45-48  -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -a -o num_top.cma num_top_printers.cmo num_top.cmo
- echo 'version = "1.6~dev"' > META.top
- cat META.num-top.in >> META.top
- ocamlopt -w +a-4-9-41-42-44-45-48  -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c int_misc.ml
- ocamlopt -w +a-4-9-41-42-44-45-48  -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c nat.ml
- ocamlopt -w +a-4-9-41-42-44-45-48  -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c big_int.ml
- ocamlopt -w +a-4-9-41-42-44-45-48  -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c arith_flags.ml
- ocamlopt -w +a-4-9-41-42-44-45-48  -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c ratio.ml
- ocamlopt -w +a-4-9-41-42-44-45-48  -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c num.ml
- ocamlopt -w +a-4-9-41-42-44-45-48  -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c arith_status.ml
- ocamlmklib -o nums -oc nums -linkall int_misc.cmx nat.cmx big_int.cmx arith_flags.cmx ratio.cmx num.cmx arith_status.cmx
- ocamlopt -w +a-4-9-41-42-44-45-48  -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -I . -shared -o nums.cmxs nums.cmxa
- make[1]: Leaving directory '/home/opam/.opam/5.1/.opam-switch/build/num.1.5-1/src'
- cp src/num-modern.install num.install
-> compiled  num.1.5-1
Processing 52/107: [dune: ocaml 71] [ocamlfind: make all]
-> installed num.1.5-1
Processing 53/107: [dune: ocaml 71] [ocamlfind: make all]
-> retrieved stdlib-shims.0.3.0  (cached)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "make" "all" (CWD=/home/opam/.opam/5.1/.opam-switch/build/ocamlfind.1.9.6)
- for p in findlib; do ( cd src/$p; make all ) || exit; done
- make[1]: Entering directory '/home/opam/.opam/5.1/.opam-switch/build/ocamlfind.1.9.6/src/findlib'
- ocamllex fl_meta.mll
- 22 states, 392 transitions, table size 1700 bytes
- USE_CYGPATH="0"; \
- export USE_CYGPATH; \
- cat findlib_config.mlp | \
-          ../../tools/patch '@CONFIGFILE@' '/home/opam/.opam/5.1/lib/findlib.conf' | \
-          ../../tools/patch '@STDLIB@' '/home/opam/.opam/5.1/lib/ocaml' | \
- 	sed -e 's;@AUTOLINK@;true;g' \
- 	    -e 's;@SYSTEM@;linux;g' \
- 	     >findlib_config.ml
- if [ "true" = "true" ]; then                 \
- 	cp topfind.ml.in topfind.ml;                             \
- else                                                             \
- 	sed -e '/PPXOPT_BEGIN/,/PPXOPT_END/ d' topfind.ml.in     \
- 		> topfind.ml ;                                   \
- fi
- ocamldep *.ml *.mli >depend
- ocamlc -I +compiler-libs -opaque   -I +unix -I +dynlink -g -c findlib_config.ml
- ocamlc -I +compiler-libs -opaque   -I +unix -I +dynlink -g -c fl_split.ml
- ocamlc -I +compiler-libs -opaque   -I +unix -I +dynlink -g -c fl_metatoken.ml
- ocamlc -I +compiler-libs -opaque   -I +unix -I +dynlink -g -c fl_meta.ml
- ocamlc -I +compiler-libs -opaque   -I +unix -I +dynlink -c fl_metascanner.mli
- ocamlc -I +compiler-libs -opaque   -I +unix -I +dynlink -g -c fl_metascanner.ml
- ocamlc -I +compiler-libs -opaque   -I +unix -I +dynlink -c fl_topo.mli
- ocamlc -I +compiler-libs -opaque   -I +unix -I +dynlink -g -c fl_topo.ml
- ocamlc -I +compiler-libs -opaque   -I +unix -I +dynlink -c fl_package_base.mli
- ocamlc -I +compiler-libs -opaque   -I +unix -I +dynlink -g -c fl_package_base.ml
- File "fl_package_base.ml", line 304, characters 22-40:
- 304 | 	 let pkg_ancestors = query_requirements predlist pkg in
-       	                     ^^^^^^^^^^^^^^^^^^
- Warning 6 [labels-omitted]: label preds was omitted in the application of this function.
- 
- File "fl_package_base.ml", line 350, characters 18-36:
- 350 |   let ancestors = query_requirements predlist package_name in
-                         ^^^^^^^^^^^^^^^^^^
- Warning 6 [labels-omitted]: label preds was omitted in the application of this function.
- 
- File "fl_package_base.ml", line 375, characters 23-41:
- 375 | 	  let pkg_ancestors = query_requirements predlist pkg in
-       	                      ^^^^^^^^^^^^^^^^^^
- Warning 6 [labels-omitted]: label preds was omitted in the application of this function.
- 
- File "fl_package_base.ml", line 510, characters 16-35:
- 510 | 	     ( let c = package_definitions search_path pkg.package_name in
-       	               ^^^^^^^^^^^^^^^^^^^
- Warning 6 [labels-omitted]: label search_path was omitted in the application of this function.
- ocamlc -I +compiler-libs -opaque   -I +unix -I +dynlink -c findlib.mli
- ocamlc -I +compiler-libs -opaque   -I +unix -I +dynlink -g -c findlib.ml
- File "findlib.ml", line 390, characters 2-26:
- 390 |   Fl_package_base.requires predlist pkg
-         ^^^^^^^^^^^^^^^^^^^^^^^^
- Warning 6 [labels-omitted]: label preds was omitted in the application of this function.
- 
- File "findlib.ml", line 396, characters 2-33:
- 396 |   Fl_package_base.requires_deeply predlist pkglist
-         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
- Warning 6 [labels-omitted]: label preds was omitted in the application of this function.
- ocamlc -I +compiler-libs -opaque   -I +unix -I +dynlink -g -c fl_args.ml
- ocamlc -I +compiler-libs -opaque   -I +unix -I +dynlink -g -c fl_lint.ml
- ocamlc -I +compiler-libs -a -o findlib.cma findlib_config.cmo fl_split.cmo fl_metatoken.cmo fl_meta.cmo fl_metascanner.cmo fl_topo.cmo fl_package_base.cmo findlib.cmo fl_args.cmo fl_lint.cmo
- ocamlc -I +compiler-libs -opaque   -I +unix -I +dynlink -g -c ocaml_args.ml
- ocamlc -I +compiler-libs -opaque   -I +unix -I +dynlink -g -c frontend.ml
- File "frontend.ml", line 859, characters 10-39:
- 859 |           Fl_package_base.package_users predicates1 packages1
-                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
- Warning 6 [labels-omitted]: label preds was omitted in the application of this function.
- ocamlc -I +compiler-libs  -o ocamlfind -g findlib.cma unix.cma \
-            -I +unix -I +dynlink ocaml_args.cmo frontend.cmo
- ocamlc -I +compiler-libs -opaque   -I +unix -I +dynlink -c topfind.mli
- ocamlc -I +compiler-libs -opaque   -I +unix -I +dynlink -g -c topfind.ml
- File "topfind.ml", line 128, characters 40-63:
- 128 |                      match Hashtbl.find Toploop.directive_table "ppx" with
-                                               ^^^^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: Toploop.directive_table
- 
- File "topfind.ml", line 258, characters 4-27:
- 258 |     Toploop.directive_table
-           ^^^^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: Toploop.directive_table
- 
- File "topfind.ml", line 268, characters 4-27:
- 268 |     Toploop.directive_table
-           ^^^^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: Toploop.directive_table
- 
- File "topfind.ml", line 280, characters 4-27:
- 280 |     Toploop.directive_table
-           ^^^^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: Toploop.directive_table
- 
- File "topfind.ml", line 293, characters 4-27:
- 293 |     Toploop.directive_table
-           ^^^^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: Toploop.directive_table
- 
- File "topfind.ml", line 307, characters 4-27:
- 307 |     Toploop.directive_table
-           ^^^^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: Toploop.directive_table
- 
- File "topfind.ml", line 319, characters 4-27:
- 319 |     Toploop.directive_table
-           ^^^^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: Toploop.directive_table
- ocamlc -I +compiler-libs -a -o findlib_top.cma topfind.cmo
- USE_CYGPATH="0"; \
- export USE_CYGPATH; \
- cat topfind_rd1.p | \
-          ../../tools/patch '@SITELIB@' '/home/opam/.opam/5.1/lib' \
-     	    >topfind
- ocamlc -I +compiler-libs -opaque   -I +unix -I +dynlink -c fl_dynload.mli
- ocamlc -I +compiler-libs -opaque   -I +unix -I +dynlink -g -c fl_dynload.ml
- ocamlc -I +compiler-libs -a -o findlib_dynload.cma fl_dynload.cmo
- make[1]: Leaving directory '/home/opam/.opam/5.1/.opam-switch/build/ocamlfind.1.9.6/src/findlib'
- make all-config
- make[1]: Entering directory '/home/opam/.opam/5.1/.opam-switch/build/ocamlfind.1.9.6'
- USE_CYGPATH="0"; \
- export USE_CYGPATH; \
- cat findlib.conf.in | \
-      tools/patch '@SITELIB@' '/home/opam/.opam/5.1/lib' | \
- 		 tools/patch '@FINDLIB_PATH@' '/home/opam/.opam/5.1/lib/ocaml:/home/opam/.opam/5.1/lib' -p >findlib.conf
- if ./tools/cmd_from_same_dir ocamlc; then \
- 	echo 'ocamlc="ocamlc.opt"' >>findlib.conf; \
- fi
- if ./tools/cmd_from_same_dir ocamlopt; then \
- 	echo 'ocamlopt="ocamlopt.opt"' >>findlib.conf; \
- fi
- if ./tools/cmd_from_same_dir ocamldep; then \
- 	echo 'ocamldep="ocamldep.opt"' >>findlib.conf; \
- fi
- if ./tools/cmd_from_same_dir ocamldoc; then \
- 	echo 'ocamldoc="ocamldoc.opt"' >>findlib.conf; \
- fi
- make[1]: Leaving directory '/home/opam/.opam/5.1/.opam-switch/build/ocamlfind.1.9.6'
Processing 53/107: [dune: ocaml 71] [ocamlfind: make opt]
-> retrieved vector3.1.0.0  (cached)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "make" "opt" (CWD=/home/opam/.opam/5.1/.opam-switch/build/ocamlfind.1.9.6)
- for p in findlib; do ( cd src/$p; make opt ) || exit; done
- make[1]: Entering directory '/home/opam/.opam/5.1/.opam-switch/build/ocamlfind.1.9.6/src/findlib'
- ocamlopt -I +compiler-libs -g -opaque  -I +unix -I +dynlink -c findlib_config.ml
- ocamlopt -I +compiler-libs -g -opaque  -I +unix -I +dynlink -c fl_split.ml
- ocamlopt -I +compiler-libs -g -opaque  -I +unix -I +dynlink -c fl_metatoken.ml
- ocamlopt -I +compiler-libs -g -opaque  -I +unix -I +dynlink -c fl_meta.ml
- ocamlopt -I +compiler-libs -g -opaque  -I +unix -I +dynlink -c fl_metascanner.ml
- ocamlopt -I +compiler-libs -g -opaque  -I +unix -I +dynlink -c fl_topo.ml
- ocamlopt -I +compiler-libs -g -opaque  -I +unix -I +dynlink -c fl_package_base.ml
- File "fl_package_base.ml", line 304, characters 22-40:
- 304 | 	 let pkg_ancestors = query_requirements predlist pkg in
-       	                     ^^^^^^^^^^^^^^^^^^
- Warning 6 [labels-omitted]: label preds was omitted in the application of this function.
- 
- File "fl_package_base.ml", line 350, characters 18-36:
- 350 |   let ancestors = query_requirements predlist package_name in
-                         ^^^^^^^^^^^^^^^^^^
- Warning 6 [labels-omitted]: label preds was omitted in the application of this function.
- 
- File "fl_package_base.ml", line 375, characters 23-41:
- 375 | 	  let pkg_ancestors = query_requirements predlist pkg in
-       	                      ^^^^^^^^^^^^^^^^^^
- Warning 6 [labels-omitted]: label preds was omitted in the application of this function.
- 
- File "fl_package_base.ml", line 510, characters 16-35:
- 510 | 	     ( let c = package_definitions search_path pkg.package_name in
-       	               ^^^^^^^^^^^^^^^^^^^
- Warning 6 [labels-omitted]: label search_path was omitted in the application of this function.
- ocamlopt -I +compiler-libs -g -opaque  -I +unix -I +dynlink -c findlib.ml
- File "findlib.ml", line 390, characters 2-26:
- 390 |   Fl_package_base.requires predlist pkg
-         ^^^^^^^^^^^^^^^^^^^^^^^^
- Warning 6 [labels-omitted]: label preds was omitted in the application of this function.
- 
- File "findlib.ml", line 396, characters 2-33:
- 396 |   Fl_package_base.requires_deeply predlist pkglist
-         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
- Warning 6 [labels-omitted]: label preds was omitted in the application of this function.
- ocamlopt -I +compiler-libs -g -opaque  -I +unix -I +dynlink -c fl_args.ml
- ocamlopt -I +compiler-libs -g -opaque  -I +unix -I +dynlink -c fl_lint.ml
- ocamlopt -I +compiler-libs -g -a -o findlib.cmxa findlib_config.cmx fl_split.cmx fl_metatoken.cmx fl_meta.cmx fl_metascanner.cmx fl_topo.cmx fl_package_base.cmx findlib.cmx fl_args.cmx fl_lint.cmx
- if [ 1 -gt 0 ]; then \
-     ocamlopt -I +compiler-libs -g -shared -o findlib.cmxs findlib_config.cmx fl_split.cmx fl_metatoken.cmx fl_meta.cmx fl_metascanner.cmx fl_topo.cmx fl_package_base.cmx findlib.cmx fl_args.cmx fl_lint.cmx; \
- fi
- ocamlopt -I +compiler-libs -g -opaque  -I +unix -I +dynlink -c ocaml_args.ml
- ocamlopt -I +compiler-libs -g -opaque  -I +unix -I +dynlink -c frontend.ml
- File "frontend.ml", line 859, characters 10-39:
- 859 |           Fl_package_base.package_users predicates1 packages1
-                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
- Warning 6 [labels-omitted]: label preds was omitted in the application of this function.
- ocamlopt -I +compiler-libs -g -o ocamlfind_opt findlib.cmxa unix.cmxa \
- 	   -I +unix -I +dynlink ocaml_args.cmx frontend.cmx
- ocamlopt -I +compiler-libs -g -opaque  -I +unix -I +dynlink -c topfind.ml
- File "topfind.ml", line 128, characters 40-63:
- 128 |                      match Hashtbl.find Toploop.directive_table "ppx" with
-                                               ^^^^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: Toploop.directive_table
- 
- File "topfind.ml", line 258, characters 4-27:
- 258 |     Toploop.directive_table
-           ^^^^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: Toploop.directive_table
- 
- File "topfind.ml", line 268, characters 4-27:
- 268 |     Toploop.directive_table
-           ^^^^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: Toploop.directive_table
- 
- File "topfind.ml", line 280, characters 4-27:
- 280 |     Toploop.directive_table
-           ^^^^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: Toploop.directive_table
- 
- File "topfind.ml", line 293, characters 4-27:
- 293 |     Toploop.directive_table
-           ^^^^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: Toploop.directive_table
- 
- File "topfind.ml", line 307, characters 4-27:
- 307 |     Toploop.directive_table
-           ^^^^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: Toploop.directive_table
- 
- File "topfind.ml", line 319, characters 4-27:
- 319 |     Toploop.directive_table
-           ^^^^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: Toploop.directive_table
- ocamlopt -I +compiler-libs -g -a -o findlib_top.cmxa topfind.cmx
- if [ 1 -gt 0 ]; then \
-     ocamlopt -I +compiler-libs -g -shared -o findlib_top.cmxs topfind.cmx; \
- fi
- ocamlopt -I +compiler-libs -g -opaque  -I +unix -I +dynlink -c fl_dynload.ml
- ocamlopt -I +compiler-libs -g -a -o findlib_dynload.cmxa fl_dynload.cmx
- if [ 1 -gt 0 ]; then \
-     ocamlopt -I +compiler-libs -g -shared -o findlib_dynload.cmxs fl_dynload.cmx; \
- fi
- make[1]: Leaving directory '/home/opam/.opam/5.1/.opam-switch/build/ocamlfind.1.9.6/src/findlib'
-> compiled  ocamlfind.1.9.6
Processing 53/107: [dune: ocaml 71]
Processing 54/107: [dune: ocaml 71] [ocamlfind: make install]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "make" "install" (CWD=/home/opam/.opam/5.1/.opam-switch/build/ocamlfind.1.9.6)
- if [ "0" -eq 1 ]; then \
-     for x in camlp4 dbm graphics labltk num ocamlbuild; do \
-       if [ -f "/home/opam/.opam/5.1/lib/$x/META" ]; then \
-         if ! grep -Fq '[distributed with Ocaml]' "//home/opam/.opam/5.1/lib/$x/META"; then \
-           rm -f site-lib-src/$x/META; \
-         fi; \
-       fi; \
-     done; \
-     test -f "site-lib-src/num/META" || rm -f "site-lib-src/num-top/META"; \
-   fi
- echo 'SITELIB_META =' > Makefile.packages.in
- for x in `ls site-lib-src`; do test ! -f "site-lib-src/$x/META" || echo $x >> Makefile.packages.in; done
- tr '\n' ' ' < Makefile.packages.in > Makefile.packages
- rm Makefile.packages.in
- install -d "/home/opam/.opam/5.1/bin"
- install -d "/home/opam/.opam/5.1/man"
- make install-config
- make[1]: Entering directory '/home/opam/.opam/5.1/.opam-switch/build/ocamlfind.1.9.6'
- install -d "`dirname \"/home/opam/.opam/5.1/lib/findlib.conf\"`"
- test -f "/home/opam/.opam/5.1/lib/findlib.conf" || install -c findlib.conf "/home/opam/.opam/5.1/lib/findlib.conf"
- make[1]: Leaving directory '/home/opam/.opam/5.1/.opam-switch/build/ocamlfind.1.9.6'
- for p in findlib; do ( cd src/$p; make install ); done
- make[1]: Entering directory '/home/opam/.opam/5.1/.opam-switch/build/ocamlfind.1.9.6/src/findlib'
- install -d "/home/opam/.opam/5.1/lib/findlib"
- install -d "/home/opam/.opam/5.1/bin"
- test 1 -eq 0 || install -d "/home/opam/.opam/5.1/lib/ocaml"
- test 1 -eq 0 || install -c topfind "/home/opam/.opam/5.1/lib/ocaml/"
- files=` ../../tools/collect_files ../../Makefile.config \
- findlib.cmi findlib.mli findlib.cma findlib.cmxa findlib.a findlib.cmxs \
- findlib_config.cmi findlib_config.ml topfind.cmi topfind.mli \
- fl_args.cmi fl_lint.cmi fl_meta.cmi fl_split.cmi fl_topo.cmi ocaml_args.cmi \
- fl_package_base.mli fl_package_base.cmi fl_metascanner.mli fl_metascanner.cmi \
- fl_metatoken.cmi findlib_top.cma findlib_top.cmxa findlib_top.a findlib_top.cmxs \
- findlib_dynload.cma findlib_dynload.cmxa findlib_dynload.a findlib_dynload.cmxs fl_dynload.mli fl_dynload.cmi \
- META` && \
- install -c $files "/home/opam/.opam/5.1/lib/findlib/"
- f="ocamlfind"; { test -f ocamlfind_opt && f="ocamlfind_opt"; }; \
- install -c $f "/home/opam/.opam/5.1/bin/ocamlfind"
- # the following "if" block is only needed for 4.00beta2
- if [ 1 -eq 0 -a -f "/home/opam/.opam/5.1/lib/ocaml/compiler-libs/topdirs.cmi" ]; then \
-     cd "/home/opam/.opam/5.1/lib/ocaml/compiler-libs/"; \
-     install -c topdirs.cmi toploop.cmi "/home/opam/.opam/5.1/lib/findlib/"; \
- fi
- make[1]: Leaving directory '/home/opam/.opam/5.1/.opam-switch/build/ocamlfind.1.9.6/src/findlib'
- make install-meta
- make[1]: Entering directory '/home/opam/.opam/5.1/.opam-switch/build/ocamlfind.1.9.6'
- for x in bytes ; do install -d "/home/opam/.opam/5.1/lib/$x"; install -c site-lib-src/$x/META "/home/opam/.opam/5.1/lib/$x/META.tmp" && mv "/home/opam/.opam/5.1/lib/$x/META.tmp" "/home/opam/.opam/5.1/lib/$x/META"; done
- install -d "/home/opam/.opam/5.1/lib/findlib"; install -c Makefile.packages "/home/opam/.opam/5.1/lib/findlib/Makefile.packages"
- make[1]: Leaving directory '/home/opam/.opam/5.1/.opam-switch/build/ocamlfind.1.9.6'
- test ! -f 'site-lib-src/num-top/META' || { cd src/findlib; make install-num-top; }
- test ! -f 'site-lib-src/camlp4/META' ||	install -c tools/safe_camlp4 "/home/opam/.opam/5.1/bin"
- make install-doc
- make[1]: Entering directory '/home/opam/.opam/5.1/.opam-switch/build/ocamlfind.1.9.6'
- install -d "/home/opam/.opam/5.1/man/man1" "/home/opam/.opam/5.1/man/man3" "/home/opam/.opam/5.1/man/man5"
- install -c doc/ref-man/ocamlfind.1 "/home/opam/.opam/5.1/man/man1"
- install -c doc/ref-man/META.5 doc/ref-man/site-lib.5 doc/ref-man/findlib.conf.5 "/home/opam/.opam/5.1/man/man5"
- make[1]: Leaving directory '/home/opam/.opam/5.1/.opam-switch/build/ocamlfind.1.9.6'
-> installed ocamlfind.1.9.6
Processing 54/107: [dune: ocaml 71]
Processing 55/107: [dune: ocaml 71]
-> installed base-bytes.base
Processing 56/107: [dune: ocaml 71]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "ocaml" "boot/bootstrap.ml" "-j" "71" (CWD=/home/opam/.opam/5.1/.opam-switch/build/dune.3.17.1)
- ocamlc -output-complete-exe -w -24 -g -o .duneboot.exe -I boot -I +unix unix.cma boot/libs.ml boot/duneboot.ml
- ./.duneboot.exe -j 71
- 

Processing 56/107: [dune: ./_boot/dune.exe build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "./_boot/dune.exe" "build" "dune.install" "--release" "--profile" "dune-bootstrap" "-j" "71" (CWD=/home/opam/.opam/5.1/.opam-switch/build/dune.3.17.1)
-> compiled  dune.3.17.1
-> installed dune.3.17.1
Processing 58/107: [camlp-streams: dune build]
Processing 59/107: [camlp-streams: dune build] [cpu: autoconf]
Processing 60/107: [camlp-streams: dune build] [cpu: autoconf] [csexp: dune build]
Processing 61/107: [camlp-streams: dune build] [cpu: autoconf] [csexp: dune build] [dolog: dune build]
Processing 62/107: [camlp-streams: dune build] [cpu: autoconf] [csexp: dune build] [dolog: dune build] [minicli: dune build]
Processing 63/107: [camlp-streams: dune build] [cpu: autoconf] [csexp: dune build] [dolog: dune build] [minicli: dune build] [ocaml-compiler-libs: dune build]
Processing 64/107: [camlp-streams: dune build] [cpu: autoconf] [csexp: dune build] [dolog: dune build] [minicli: dune build] [ocaml-compiler-libs: dune build] [ppx_derivers: dune build]
Processing 65/107: [camlp-streams: dune build] [cpu: autoconf] [csexp: dune build] [dolog: dune build] [minicli: dune build] [ocaml-compiler-libs: dune build] [ppx_derivers: dune build] [re: dune build]
Processing 66/107: [camlp-streams: dune build] [cpu: autoconf] [csexp: dune build] [dolog: dune build] [minicli: dune build] [ocaml-compiler-libs: dune build] [ppx_derivers: dune build] [re: dune build] [sexplib0: dune build]
Processing 67/107: [camlp-streams: dune build] [cpu: autoconf] [csexp: dune build] [dolog: dune build] [minicli: dune build] [ocaml-compiler-libs: dune build] [ppx_derivers: dune build] [re: dune build] [sexplib0: dune build] [stdcompat: dune build]
Processing 68/107: [camlp-streams: dune build] [cpu: autoconf] [csexp: dune build] [dolog: dune build] [minicli: dune build] [ocaml-compiler-libs: dune build] [ppx_derivers: dune build] [re: dune build] [sexplib0: dune build] [stdcompat: dune build] [stdlib-shims: dune build]
Processing 69/107: [camlp-streams: dune build] [cpu: autoconf] [csexp: dune build] [dolog: dune build] [minicli: dune build] [ocaml-compiler-libs: dune build] [ppx_derivers: dune build] [re: dune build] [sexplib0: dune build] [stdcompat: dune build] [stdlib-shims: dune build] [vector3: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "ppx_derivers" "-j" "71" (CWD=/home/opam/.opam/5.1/.opam-switch/build/ppx_derivers.1.2.1)
-> compiled  ppx_derivers.1.2.1
Processing 69/107: [camlp-streams: dune build] [cpu: autoconf] [csexp: dune build] [dolog: dune build] [minicli: dune build] [ocaml-compiler-libs: dune build] [re: dune build] [sexplib0: dune build] [stdcompat: dune build] [stdlib-shims: dune build] [vector3: dune build]
-> installed ppx_derivers.1.2.1
Processing 70/107: [camlp-streams: dune build] [cpu: autoconf] [csexp: dune build] [dolog: dune build] [minicli: dune build] [ocaml-compiler-libs: dune build] [re: dune build] [sexplib0: dune build] [stdcompat: dune build] [stdlib-shims: dune build] [vector3: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "csexp" "-j" "71" "@install" (CWD=/home/opam/.opam/5.1/.opam-switch/build/csexp.1.5.2)
-> compiled  csexp.1.5.2
Processing 70/107: [camlp-streams: dune build] [cpu: autoconf] [dolog: dune build] [minicli: dune build] [ocaml-compiler-libs: dune build] [re: dune build] [sexplib0: dune build] [stdcompat: dune build] [stdlib-shims: dune build] [vector3: dune build]
-> installed csexp.1.5.2
Processing 71/107: [camlp-streams: dune build] [cpu: autoconf] [dolog: dune build] [minicli: dune build] [ocaml-compiler-libs: dune build] [re: dune build] [sexplib0: dune build] [stdcompat: dune build] [stdlib-shims: dune build] [vector3: dune build]
Processing 72/107: [camlp-streams: dune build] [cpu: autoconf] [dolog: dune build] [dune-configurator: rm] [minicli: dune build] [ocaml-compiler-libs: dune build] [re: dune build] [sexplib0: dune build] [stdcompat: dune build] [stdlib-shims: dune build] [vector3: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "camlp-streams" "-j" "71" "@install" (CWD=/home/opam/.opam/5.1/.opam-switch/build/camlp-streams.5.0.1)
-> compiled  camlp-streams.5.0.1
Processing 72/107: [cpu: autoconf] [dolog: dune build] [dune-configurator: rm] [minicli: dune build] [ocaml-compiler-libs: dune build] [re: dune build] [sexplib0: dune build] [stdcompat: dune build] [stdlib-shims: dune build] [vector3: dune build]
-> installed camlp-streams.5.0.1
Processing 73/107: [cpu: autoconf] [dolog: dune build] [dune-configurator: rm] [minicli: dune build] [ocaml-compiler-libs: dune build] [re: dune build] [sexplib0: dune build] [stdcompat: dune build] [stdlib-shims: dune build] [vector3: dune build]
Processing 74/107: [batteries: dune build] [cpu: autoconf] [dolog: dune build] [dune-configurator: rm] [minicli: dune build] [ocaml-compiler-libs: dune build] [re: dune build] [sexplib0: dune build] [stdcompat: dune build] [stdlib-shims: dune build] [vector3: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "autoconf" (CWD=/home/opam/.opam/5.1/.opam-switch/build/cpu.2.0.0)
- configure.ac:8: warning: The macro 'AC_HEADER_STDC' is obsolete.
- configure.ac:8: You should run autoupdate.
- ./lib/autoconf/headers.m4:663: AC_HEADER_STDC is expanded from...
- configure.ac:8: the top level
Processing 74/107: [batteries: dune build] [cpu: autoheader] [dolog: dune build] [dune-configurator: rm] [minicli: dune build] [ocaml-compiler-libs: dune build] [re: dune build] [sexplib0: dune build] [stdcompat: dune build] [stdlib-shims: dune build] [vector3: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "dolog" "-j" "71" (CWD=/home/opam/.opam/5.1/.opam-switch/build/dolog.6.0.0)
-> compiled  dolog.6.0.0
Processing 74/107: [batteries: dune build] [cpu: autoheader] [dune-configurator: rm] [minicli: dune build] [ocaml-compiler-libs: dune build] [re: dune build] [sexplib0: dune build] [stdcompat: dune build] [stdlib-shims: dune build] [vector3: dune build]
-> installed dolog.6.0.0
Processing 75/107: [batteries: dune build] [cpu: autoheader] [dune-configurator: rm] [minicli: dune build] [ocaml-compiler-libs: dune build] [re: dune build] [sexplib0: dune build] [stdcompat: dune build] [stdlib-shims: dune build] [vector3: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "minicli" "-j" "71" (CWD=/home/opam/.opam/5.1/.opam-switch/build/minicli.5.0.2)
-> compiled  minicli.5.0.2
Processing 75/107: [batteries: dune build] [cpu: autoheader] [dune-configurator: rm] [ocaml-compiler-libs: dune build] [re: dune build] [sexplib0: dune build] [stdcompat: dune build] [stdlib-shims: dune build] [vector3: dune build]
-> installed minicli.5.0.2
Processing 76/107: [batteries: dune build] [cpu: autoheader] [dune-configurator: rm] [ocaml-compiler-libs: dune build] [re: dune build] [sexplib0: dune build] [stdcompat: dune build] [stdlib-shims: dune build] [vector3: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "sexplib0" "-j" "71" (CWD=/home/opam/.opam/5.1/.opam-switch/build/sexplib0.v0.17.0)
-> compiled  sexplib0.v0.17.0
Processing 76/107: [batteries: dune build] [cpu: autoheader] [dune-configurator: rm] [ocaml-compiler-libs: dune build] [re: dune build] [stdcompat: dune build] [stdlib-shims: dune build] [vector3: dune build]
-> installed sexplib0.v0.17.0
Processing 77/107: [batteries: dune build] [cpu: autoheader] [dune-configurator: rm] [ocaml-compiler-libs: dune build] [re: dune build] [stdcompat: dune build] [stdlib-shims: dune build] [vector3: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "stdlib-shims" "-j" "71" (CWD=/home/opam/.opam/5.1/.opam-switch/build/stdlib-shims.0.3.0)
-> compiled  stdlib-shims.0.3.0
Processing 77/107: [batteries: dune build] [cpu: autoheader] [dune-configurator: rm] [ocaml-compiler-libs: dune build] [re: dune build] [stdcompat: dune build] [vector3: dune build]
-> installed stdlib-shims.0.3.0
Processing 78/107: [batteries: dune build] [cpu: autoheader] [dune-configurator: rm] [ocaml-compiler-libs: dune build] [re: dune build] [stdcompat: dune build] [vector3: dune build]
Processing 79/107: [batteries: dune build] [cpu: autoheader] [dune-configurator: rm] [ocaml-compiler-libs: dune build] [ocamlgraph: dune build] [re: dune build] [stdcompat: dune build] [vector3: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "vector3" "-j" "71" (CWD=/home/opam/.opam/5.1/.opam-switch/build/vector3.1.0.0)
-> compiled  vector3.1.0.0
Processing 79/107: [batteries: dune build] [cpu: autoheader] [dune-configurator: rm] [ocaml-compiler-libs: dune build] [ocamlgraph: dune build] [re: dune build] [stdcompat: dune build]
-> installed vector3.1.0.0
Processing 80/107: [batteries: dune build] [cpu: autoheader] [dune-configurator: rm] [ocaml-compiler-libs: dune build] [ocamlgraph: dune build] [re: dune build] [stdcompat: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "rm" "-rf" "vendor/csexp" (CWD=/home/opam/.opam/5.1/.opam-switch/build/dune-configurator.3.17.1)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "rm" "-rf" "vendor/pp" (CWD=/home/opam/.opam/5.1/.opam-switch/build/dune-configurator.3.17.1)
Processing 80/107: [batteries: dune build] [cpu: autoheader] [dune-configurator: dune build] [ocaml-compiler-libs: dune build] [ocamlgraph: dune build] [re: dune build] [stdcompat: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "ocaml-compiler-libs" "-j" "71" "@install" (CWD=/home/opam/.opam/5.1/.opam-switch/build/ocaml-compiler-libs.v0.12.4)
-> compiled  ocaml-compiler-libs.v0.12.4
Processing 80/107: [batteries: dune build] [cpu: autoheader] [dune-configurator: dune build] [ocamlgraph: dune build] [re: dune build] [stdcompat: dune build]
-> installed ocaml-compiler-libs.v0.12.4
Processing 81/107: [batteries: dune build] [cpu: autoheader] [dune-configurator: dune build] [ocamlgraph: dune build] [re: dune build] [stdcompat: dune build]
Processing 82/107: [batteries: dune build] [cpu: autoheader] [dune-configurator: dune build] [ocamlgraph: dune build] [ppxlib: dune build] [re: dune build] [stdcompat: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "autoheader" (CWD=/home/opam/.opam/5.1/.opam-switch/build/cpu.2.0.0)
Processing 82/107: [batteries: dune build] [cpu: ./configure] [dune-configurator: dune build] [ocamlgraph: dune build] [ppxlib: dune build] [re: dune build] [stdcompat: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "re" "-j" "71" (CWD=/home/opam/.opam/5.1/.opam-switch/build/re.1.12.0)
-> compiled  re.1.12.0
Processing 82/107: [batteries: dune build] [cpu: ./configure] [dune-configurator: dune build] [ocamlgraph: dune build] [ppxlib: dune build] [stdcompat: dune build]
-> installed re.1.12.0
Processing 83/107: [batteries: dune build] [cpu: ./configure] [dune-configurator: dune build] [ocamlgraph: dune build] [ppxlib: dune build] [stdcompat: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "dune-configurator" "-j" "71" "@install" (CWD=/home/opam/.opam/5.1/.opam-switch/build/dune-configurator.3.17.1)
-> compiled  dune-configurator.3.17.1
Processing 83/107: [batteries: dune build] [cpu: ./configure] [ocamlgraph: dune build] [ppxlib: dune build] [stdcompat: dune build]
-> installed dune-configurator.3.17.1
Processing 84/107: [batteries: dune build] [cpu: ./configure] [ocamlgraph: dune build] [ppxlib: dune build] [stdcompat: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "./configure" (CWD=/home/opam/.opam/5.1/.opam-switch/build/cpu.2.0.0)
- checking for ocamlc... ocamlc
- OCaml version is 5.1.0
- OCaml library path is /home/opam/.opam/5.1/lib/ocaml
- checking for ocamlopt... ocamlopt
- checking for ocamlc.opt... ocamlc.opt
- checking for ocamlopt.opt... ocamlopt.opt
- checking for dynlink.cmxa... no
- checking for ocaml... ocaml
- checking for ocamldep... ocamldep
- checking for ocamlmktop... ocamlmktop
- checking for ocamlmklib... ocamlmklib
- checking for ocamldoc... ocamldoc
- checking for ocamlbuild... no
- checking for gcc... gcc
- checking whether the C compiler works... yes
- checking for C compiler default output file name... a.out
- checking for suffix of executables... 
- checking whether we are cross compiling... no
- checking for suffix of object files... o
- checking whether the compiler supports GNU C... yes
- checking whether gcc accepts -g... yes
- checking for gcc option to enable C11 features... none needed
- checking for stdio.h... yes
- checking for stdlib.h... yes
- checking for string.h... yes
- checking for inttypes.h... yes
- checking for stdint.h... yes
- checking for strings.h... yes
- checking for sys/stat.h... yes
- checking for sys/types.h... yes
- checking for unistd.h... yes
- checking for grep that handles long lines and -e... /usr/bin/grep
- checking for egrep... /usr/bin/grep -E
- checking for sched.h... yes
- checking for gcc options needed to detect all undeclared functions... none needed
- checking whether sched_setaffinity is declared... yes
- checking for mach/thread_policy.h... no
- checking whether thread_policy_set is declared... no
- configure: creating ./config.status
- config.status: creating src/config.h
Processing 84/107: [batteries: dune build] [cpu: dune build] [ocamlgraph: dune build] [ppxlib: dune build] [stdcompat: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "cpu" "-j" "71" (CWD=/home/opam/.opam/5.1/.opam-switch/build/cpu.2.0.0)
-> compiled  cpu.2.0.0
Processing 84/107: [batteries: dune build] [ocamlgraph: dune build] [ppxlib: dune build] [stdcompat: dune build]
-> installed cpu.2.0.0
Processing 85/107: [batteries: dune build] [ocamlgraph: dune build] [ppxlib: dune build] [stdcompat: dune build]
Processing 86/107: [batteries: dune build] [ocamlgraph: dune build] [parany: dune build] [ppxlib: dune build] [stdcompat: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "parany" "-j" "71" (CWD=/home/opam/.opam/5.1/.opam-switch/build/parany.14.0.1)
-> compiled  parany.14.0.1
Processing 86/107: [batteries: dune build] [ocamlgraph: dune build] [ppxlib: dune build] [stdcompat: dune build]
-> installed parany.14.0.1
Processing 87/107: [batteries: dune build] [ocamlgraph: dune build] [ppxlib: dune build] [stdcompat: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "ocamlgraph" "-j" "71" "@install" (CWD=/home/opam/.opam/5.1/.opam-switch/build/ocamlgraph.2.1.0)
-> compiled  ocamlgraph.2.1.0
Processing 87/107: [batteries: dune build] [ppxlib: dune build] [stdcompat: dune build]
-> installed ocamlgraph.2.1.0
Processing 88/107: [batteries: dune build] [ppxlib: dune build] [stdcompat: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "batteries" "-j" "71" "@install" (CWD=/home/opam/.opam/5.1/.opam-switch/build/batteries.3.9.0)
-> compiled  batteries.3.9.0
Processing 88/107: [ppxlib: dune build] [stdcompat: dune build]
-> installed batteries.3.9.0
Processing 89/107: [ppxlib: dune build] [stdcompat: dune build]
Processing 90/107: [bst: dune build] [ppxlib: dune build] [stdcompat: dune build]
Processing 91/107: [bst: dune build] [cpm: dune build] [ppxlib: dune build] [stdcompat: dune build]
Processing 92/107: [bst: dune build] [cpm: dune build] [line_oriented: dune build] [ppxlib: dune build] [stdcompat: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "line_oriented" "-j" "71" (CWD=/home/opam/.opam/5.1/.opam-switch/build/line_oriented.1.3.0)
-> compiled  line_oriented.1.3.0
Processing 92/107: [bst: dune build] [cpm: dune build] [ppxlib: dune build] [stdcompat: dune build]
-> installed line_oriented.1.3.0
Processing 93/107: [bst: dune build] [cpm: dune build] [ppxlib: dune build] [stdcompat: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "bst" "-j" "71" (CWD=/home/opam/.opam/5.1/.opam-switch/build/bst.7.1.0)
-> compiled  bst.7.1.0
Processing 93/107: [cpm: dune build] [ppxlib: dune build] [stdcompat: dune build]
-> installed bst.7.1.0
Processing 94/107: [cpm: dune build] [ppxlib: dune build] [stdcompat: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "cpm" "-j" "71" (CWD=/home/opam/.opam/5.1/.opam-switch/build/cpm.12.2.0)
-> compiled  cpm.12.2.0
Processing 94/107: [ppxlib: dune build] [stdcompat: dune build]
-> installed cpm.12.2.0
Processing 95/107: [ppxlib: dune build] [stdcompat: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "stdcompat" "-j" "71" (CWD=/home/opam/.opam/5.1/.opam-switch/build/stdcompat.19)
- (cd _build/default && ./configure)
- checking for a BSD-compatible install... /usr/bin/install -c
- checking whether build environment is sane... yes
- checking for a race-free mkdir -p... /usr/bin/mkdir -p
- checking for gawk... no
- checking for mawk... mawk
- checking whether make sets $(MAKE)... yes
- checking whether make supports nested variables... yes
- checking for ocaml... ocaml
- checking for ocamlc.opt... ocamlc.opt
- checking OCaml version... 5.1.0
- checking for ocamlfind... ocamlfind
- checking for ocamlfind package result... no
- checking for ocamlfind package seq... yes
- checking if package seq is usable... yes
- checking for ocamlfind package uchar... no
- checking whether make supports the include directive... yes (GNU style)
- checking for gcc... gcc
- checking whether the C compiler works... yes
- checking for C compiler default output file name... a.out
- checking for suffix of executables... 
- checking whether we are cross compiling... no
- checking for suffix of object files... o
- checking whether the compiler supports GNU C... yes
- checking whether gcc accepts -g... yes
- checking for gcc option to enable C11 features... none needed
- checking whether gcc understands -c and -o together... yes
- checking dependency style of gcc... none
- checking for stdio.h... yes
- checking for stdlib.h... yes
- checking for string.h... yes
- checking for inttypes.h... yes
- checking for stdint.h... yes
- checking for strings.h... yes
- checking for sys/stat.h... yes
- checking for sys/types.h... yes
- checking for unistd.h... yes
- checking whether byte ordering is bigendian... no
- checking OCaml target OS type... Unix
- checking for flambda2... false
- checking that generated files are newer than configure... done
- configure: creating ./config.status
- config.status: creating META
- config.status: creating Makefile
- config.status: creating stdcompat__hashtbl_ext.mli
- config.status: creating stdcompat__hashtbl_ext.ml
- config.status: creating stdcompat__init.mli
- config.status: creating stdcompat__init.ml
- config.status: creating stdcompat__root.mli
- config.status: creating stdcompat__root.ml
- config.status: creating stdcompat__tools.mli
- config.status: creating stdcompat__tools.ml
- config.status: creating stdcompat__native.ml_byte
- config.status: creating stdcompat__native.ml_native
- config.status: creating stdcompat_tests.ml
- config.status: creating stdcompat.h
- config.status: creating stdcompat__stubs.c
- config.status: creating stdcompat__pervasives_s.mli
- config.status: creating stdcompat__arg_s.mli
- config.status: creating stdcompat__array_s.mli
- config.status: creating stdcompat__arrayLabels_s.mli
- config.status: creating stdcompat__atomic_s.mli
- config.status: creating stdcompat__bool_s.mli
- config.status: creating stdcompat__buffer_s.mli
- config.status: creating stdcompat__bytes_s.mli
- config.status: creating stdcompat__bytesLabels_s.mli
- config.status: creating stdcompat__char_s.mli
- config.status: creating stdcompat__digest_s.mli
- config.status: creating stdcompat__either_s.mli
- config.status: creating stdcompat__ephemeron_s.mli
- config.status: creating stdcompat__filename_s.mli
- config.status: creating stdcompat__float_s.mli
- config.status: creating stdcompat__format_s.mli
- config.status: creating stdcompat__fun_s.mli
- config.status: creating stdcompat__hashtbl_s.mli
- config.status: creating stdcompat__in_channel_s.mli
- config.status: creating stdcompat__int_s.mli
- config.status: creating stdcompat__int32_s.mli
- config.status: creating stdcompat__int64_s.mli
- config.status: creating stdcompat__lazy_s.mli
- config.status: creating stdcompat__lexing_s.mli
- config.status: creating stdcompat__list_s.mli
- config.status: creating stdcompat__listLabels_s.mli
- config.status: creating stdcompat__map_s.mli
- config.status: creating stdcompat__moreLabels_s.mli
- config.status: creating stdcompat__nativeint_s.mli
- config.status: creating stdcompat__option_s.mli
- config.status: creating stdcompat__out_channel_s.mli
- config.status: creating stdcompat__printexc_s.mli
- config.status: creating stdcompat__printf_s.mli
- config.status: creating stdcompat__queue_s.mli
- config.status: creating stdcompat__random_s.mli
- config.status: creating stdcompat__result_s.mli
- config.status: creating stdcompat__seq_s.mli
- config.status: creating stdcompat__set_s.mli
- config.status: creating stdcompat__stack_s.mli
- config.status: creating stdcompat__string_s.mli
- config.status: creating stdcompat__stringLabels_s.mli
- config.status: creating stdcompat__sys_s.mli
- config.status: creating stdcompat__uchar_s.mli
- config.status: creating stdcompat__weak_s.mli
- config.status: creating stdcompat__unit_s.mli
- config.status: creating stdcompat__stdlib_s.mli
- config.status: creating stdcompat__pervasives_s.ml
- config.status: creating stdcompat__arg_s.ml
- config.status: creating stdcompat__array_s.ml
- config.status: creating stdcompat__arrayLabels_s.ml
- config.status: creating stdcompat__atomic_s.ml
- config.status: creating stdcompat__bool_s.ml
- config.status: creating stdcompat__buffer_s.ml
- config.status: creating stdcompat__bytes_s.ml
- config.status: creating stdcompat__bytesLabels_s.ml
- config.status: creating stdcompat__char_s.ml
- config.status: creating stdcompat__digest_s.ml
- config.status: creating stdcompat__either_s.ml
- config.status: creating stdcompat__ephemeron_s.ml
- config.status: creating stdcompat__filename_s.ml
- config.status: creating stdcompat__float_s.ml
- config.status: creating stdcompat__format_s.ml
- config.status: creating stdcompat__fun_s.ml
- config.status: creating stdcompat__hashtbl_s.ml
- config.status: creating stdcompat__int_s.ml
- config.status: creating stdcompat__int32_s.ml
- config.status: creating stdcompat__int64_s.ml
- config.status: creating stdcompat__lazy_s.ml
- config.status: creating stdcompat__lexing_s.ml
- config.status: creating stdcompat__list_s.ml
- config.status: creating stdcompat__listLabels_s.ml
- config.status: creating stdcompat__map_s.ml
- config.status: creating stdcompat__moreLabels_s.ml
- config.status: creating stdcompat__nativeint_s.ml
- config.status: creating stdcompat__option_s.ml
- config.status: creating stdcompat__printexc_s.ml
- config.status: creating stdcompat__printf_s.ml
- config.status: creating stdcompat__queue_s.ml
- config.status: creating stdcompat__random_s.ml
- config.status: creating stdcompat__result_s.ml
- config.status: creating stdcompat__seq_s.ml
- config.status: creating stdcompat__set_s.ml
- config.status: creating stdcompat__stack_s.ml
- config.status: creating stdcompat__stdlib_s.ml
- config.status: creating stdcompat__string_s.ml
- config.status: creating stdcompat__stringLabels_s.ml
- config.status: creating stdcompat__sys_s.ml
- config.status: creating stdcompat__uchar_s.ml
- config.status: creating stdcompat__weak_s.ml
- config.status: creating stdcompat__in_channel_s.ml
- config.status: creating stdcompat__out_channel_s.ml
- config.status: creating stdcompat__unit_s.ml
- config.status: creating stdcompat__pervasives.ml
- config.status: creating stdcompat__arg.ml
- config.status: creating stdcompat__array.ml
- config.status: creating stdcompat__arrayLabels.ml
- config.status: creating stdcompat__atomic.ml
- config.status: creating stdcompat__bool.ml
- config.status: creating stdcompat__buffer.ml
- config.status: creating stdcompat__bytes.ml
- config.status: creating stdcompat__bytesLabels.ml
- config.status: creating stdcompat__char.ml
- config.status: creating stdcompat__digest.ml
- config.status: creating stdcompat__either.ml
- config.status: creating stdcompat__ephemeron.ml
- config.status: creating stdcompat__filename.ml
- config.status: creating stdcompat__float.ml
- config.status: creating stdcompat__format.ml
- config.status: creating stdcompat__fun.ml
- config.status: creating stdcompat__hashtbl.ml
- config.status: creating stdcompat__int.ml
- config.status: creating stdcompat__int32.ml
- config.status: creating stdcompat__int64.ml
- config.status: creating stdcompat__lazy.ml
- config.status: creating stdcompat__lexing.ml
- config.status: creating stdcompat__list.ml
- config.status: creating stdcompat__listLabels.ml
- config.status: creating stdcompat__map.ml
- config.status: creating stdcompat__moreLabels.ml
- config.status: creating stdcompat__nativeint.ml
- config.status: creating stdcompat__option.ml
- config.status: creating stdcompat__printexc.ml
- config.status: creating stdcompat__printf.ml
- config.status: creating stdcompat__queue.ml
- config.status: creating stdcompat__random.ml
- config.status: creating stdcompat__result.ml
- config.status: creating stdcompat__seq.ml
- config.status: creating stdcompat__set.ml
- config.status: creating stdcompat__stack.ml
- config.status: creating stdcompat__stdlib.ml
- config.status: creating stdcompat__string.ml
- config.status: creating stdcompat__stringLabels.ml
- config.status: creating stdcompat__sys.ml
- config.status: creating stdcompat__uchar.ml
- config.status: creating stdcompat__weak.ml
- config.status: creating stdcompat__in_channel.ml
- config.status: creating stdcompat__out_channel.ml
- config.status: creating stdcompat__unit.ml
- config.status: creating stdcompat__pervasives.mli
- config.status: creating stdcompat__arg.mli
- config.status: creating stdcompat__array.mli
- config.status: creating stdcompat__arrayLabels.mli
- config.status: creating stdcompat__atomic.mli
- config.status: creating stdcompat__bool.mli
- config.status: creating stdcompat__buffer.mli
- config.status: creating stdcompat__bytes.mli
- config.status: creating stdcompat__bytesLabels.mli
- config.status: creating stdcompat__char.mli
- config.status: creating stdcompat__digest.mli
- config.status: creating stdcompat__either.mli
- config.status: creating stdcompat__ephemeron.mli
- config.status: creating stdcompat__filename.mli
- config.status: creating stdcompat__float.mli
- config.status: creating stdcompat__format.mli
- config.status: creating stdcompat__fun.mli
- config.status: creating stdcompat__hashtbl.mli
- config.status: creating stdcompat__int.mli
- config.status: creating stdcompat__int32.mli
- config.status: creating stdcompat__int64.mli
- config.status: creating stdcompat__lazy.mli
- config.status: creating stdcompat__lexing.mli
- config.status: creating stdcompat__list.mli
- config.status: creating stdcompat__listLabels.mli
- config.status: creating stdcompat__map.mli
- config.status: creating stdcompat__moreLabels.mli
- config.status: creating stdcompat__nativeint.mli
- config.status: creating stdcompat__option.mli
- config.status: creating stdcompat__printexc.mli
- config.status: creating stdcompat__printf.mli
- config.status: creating stdcompat__queue.mli
- config.status: creating stdcompat__random.mli
- config.status: creating stdcompat__result.mli
- config.status: creating stdcompat__seq.mli
- config.status: creating stdcompat__set.mli
- config.status: creating stdcompat__stack.mli
- config.status: creating stdcompat__stdlib.mli
- config.status: creating stdcompat__string.mli
- config.status: creating stdcompat__stringLabels.mli
- config.status: creating stdcompat__sys.mli
- config.status: creating stdcompat__uchar.mli
- config.status: creating stdcompat__weak.mli
- config.status: creating stdcompat__in_channel.mli
- config.status: creating stdcompat__out_channel.mli
- config.status: creating stdcompat__unit.mli
- config.status: creating stdcompat.mli
- config.status: creating stdcompat.ml
- config.status: creating config.h
- config.status: executing depfiles commands
- configure: OCaml version is 5.1.0
- configure: Obj.magic will be used in redefinition when possible
-     (add --disable-magic for pure redefinitions).
-> compiled  stdcompat.19
Processing 95/107: [ppxlib: dune build]
-> installed stdcompat.19
Processing 96/107: [ppxlib: dune build]
Processing 97/107: [ppxlib: dune build] [pyml: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "pyml" "-j" "71" "@install" (CWD=/home/opam/.opam/5.1/.opam-switch/build/pyml.20231101)
-> compiled  pyml.20231101
Processing 97/107: [ppxlib: dune build]
-> installed pyml.20231101
Processing 98/107: [ppxlib: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "ppxlib" "-j" "71" "@install" (CWD=/home/opam/.opam/5.1/.opam-switch/build/ppxlib.0.34.0)
-> compiled  ppxlib.0.34.0
-> installed ppxlib.0.34.0
Processing 100/107: [extunix: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "extunix" "-j" "71" "@install" (CWD=/home/opam/.opam/5.1/.opam-switch/build/extunix.0.4.3)
- (cd _build/default/src && ../discover/discover.exe)
- checking EVENTFD.............ok
- checking ATFILE..............ok
- checking RENAMEAT2...........ok
- checking RENAME_WHITEOUT.....ok
- checking DIRFD...............ok
- checking STATVFS.............ok
- checking FSTATVFS............ok
- checking SIOCGIFCONF.........ok
- checking IFADDRS.............ok
- checking INET_NTOA...........ok
- checking INET_NTOP...........ok
- checking UNAME...............ok
- checking FADVISE.............ok
- checking FALLOCATE...........ok
- checking TTY_IOCTL...........ok
- checking TTYNAME.............ok
- checking CTERMID.............ok
- checking GETTID..............ok
- checking PGID................ok
- checking SETREUID............ok
- checking FSYNC...............ok
- checking FDATASYNC...........ok
- checking SYNC................ok
- checking SYNCFS..............ok
- checking REALPATH............ok
- checking SIGNALFD............ok
- checking PTRACE..............ok
- checking RESOURCE............ok
- checking MLOCKALL............ok
- checking STRPTIME............ok
- checking STRTIME.............ok
- checking TIMEZONE............ok
- checking TIMEGM..............ok
- checking PTS.................ok
- checking FCNTL...............ok
- checking TCPGRP..............ok
- checking EXECINFO............ok
- checking SETENV..............ok
- checking CLEARENV............ok
- checking MKDTEMP.............ok
- checking MALLOC_INFO.........ok
- checking MALLOC_STATS........ok
- checking MEMALIGN............ok
- checking ENDIAN..............ok
- checking READ_CREDENTIALS....ok
- checking FEXECVE.............ok
- checking SENDMSG.............ok
- checking PREAD...............ok
- checking PWRITE..............ok
- checking READ................ok
- checking WRITE...............ok
- checking MKSTEMPS............ok
- checking MKOSTEMPS...........ok
- checking SETRESUID...........ok
- checking SYSCONF.............ok
- checking SPLICE..............ok
- checking TEE.................ok
- checking VMSPLICE............ok
- checking SOCKOPT.............ok
- checking TCP_KEEPIDLE........ok
- checking TCP_KEEPCNT.........ok
- checking TCP_KEEPINTVL.......ok
- checking SO_REUSEPORT........ok
- checking POLL................ok
- checking SYSINFO.............ok
- checking MCHECK..............ok
- checking MOUNT...............ok
- checking UNSHARE.............ok
- checking CHROOT..............ok
- checking SYSLOG..............ok
- (cd _build/default/src && /usr/bin/gcc -O2 -fno-strict-aliasing -fwrapv -pthread -fPIC -D_FILE_OFFSET_BITS=64 -fdiagnostics-color=always -g -I /home/opam/.opam/5.1/lib/ocaml -I /home/opam/.opam/5.1/lib/bytes -I /home/opam/.opam/5.1/lib/ocaml/unix -o rename.o -c rename.c)
- rename.c: In function 'caml_extunix_renameat2':
- rename.c:40:18: warning: passing argument 1 of 'caml_stat_free' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers]
-    40 |   caml_stat_free(oldname);
-       |                  ^~~~~~~
- In file included from config.h:26,
-                  from rename.c:2:
- /home/opam/.opam/5.1/lib/ocaml/caml/memory.h:122:32: note: expected 'caml_stat_block' {aka 'void *'} but argument is of type 'const char *'
-   122 | CAMLextern void caml_stat_free(caml_stat_block);
-       |                                ^~~~~~~~~~~~~~~
- rename.c:41:18: warning: passing argument 1 of 'caml_stat_free' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers]
-    41 |   caml_stat_free(newname);
-       |                  ^~~~~~~
- /home/opam/.opam/5.1/lib/ocaml/caml/memory.h:122:32: note: expected 'caml_stat_block' {aka 'void *'} but argument is of type 'const char *'
-   122 | CAMLextern void caml_stat_free(caml_stat_block);
-       |                                ^~~~~~~~~~~~~~~
-> compiled  extunix.0.4.3
-> installed extunix.0.4.3
Processing 102/107: [dokeysto: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "dokeysto" "-j" "71" (CWD=/home/opam/.opam/5.1/.opam-switch/build/dokeysto.4.0.1)
-> compiled  dokeysto.4.0.1
-> installed dokeysto.4.0.1
Processing 104/107: [molenc: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "molenc" "-j" "71" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.17.0.1)
-> compiled  molenc.17.0.1
Processing 105/107: [molenc: cp]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_diam.py" "/home/opam/.opam/5.1/bin/molenc_diam.py" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.17.0.1)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_ph4.py" "/home/opam/.opam/5.1/bin/molenc_ph4.py" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.17.0.1)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc.sh" "/home/opam/.opam/5.1/bin/molenc.sh" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.17.0.1)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_ligprep.sh" "/home/opam/.opam/5.1/bin/molenc_ligprep.sh" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.17.0.1)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_common.py" "/home/opam/.opam/5.1/bin/molenc_common.py" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.17.0.1)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_lean.py" "/home/opam/.opam/5.1/bin/molenc_lean.py" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.17.0.1)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_lizard.py" "/home/opam/.opam/5.1/bin/molenc_lizard.py" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.17.0.1)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_scan.py" "/home/opam/.opam/5.1/bin/molenc_scan.py" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.17.0.1)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_scan.sh" "/home/opam/.opam/5.1/bin/molenc_scan.sh" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.17.0.1)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_type_atoms.py" "/home/opam/.opam/5.1/bin/molenc_type_atoms.py" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.17.0.1)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/smi2png.py" "/home/opam/.opam/5.1/bin/molenc_smi2png.py" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.17.0.1)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_smisur.py" "/home/opam/.opam/5.1/bin/molenc_smisur.py" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.17.0.1)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_panascan.py" "/home/opam/.opam/5.1/bin/molenc_panascan.py" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.17.0.1)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_scaffold.py" "/home/opam/.opam/5.1/bin/molenc_scaffold.py" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.17.0.1)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_deepsmi.py" "/home/opam/.opam/5.1/bin/molenc_deepsmi.py" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.17.0.1)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_lead.py" "/home/opam/.opam/5.1/bin/molenc_lead.py" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.17.0.1)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_drug.py" "/home/opam/.opam/5.1/bin/molenc_drug.py" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.17.0.1)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_smi2cansmi.py" "/home/opam/.opam/5.1/bin/molenc_smi2cansmi.py" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.17.0.1)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_std.py" "/home/opam/.opam/5.1/bin/molenc_std.py" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.17.0.1)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_padel.py" "/home/opam/.opam/5.1/bin/molenc_padel.py" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.17.0.1)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_rotbond.py" "/home/opam/.opam/5.1/bin/molenc_rotbond.py" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.17.0.1)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_mview.py" "/home/opam/.opam/5.1/bin/molenc_mview.py" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.17.0.1)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_HA.py" "/home/opam/.opam/5.1/bin/molenc_HA.py" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.17.0.1)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_sdf2smi.py" "/home/opam/.opam/5.1/bin/molenc_sdf2smi.py" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.17.0.1)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_atoms_filter.py" "/home/opam/.opam/5.1/bin/molenc_atoms_filter.py" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.17.0.1)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_gpr.py" "/home/opam/.opam/5.1/bin/molenc_gpr.py" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.17.0.1)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_stable.py" "/home/opam/.opam/5.1/bin/molenc_stable.py" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.17.0.1)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_thash.py" "/home/opam/.opam/5.1/bin/molenc_thash.py" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.17.0.1)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_SA.py" "/home/opam/.opam/5.1/bin/molenc_SA.py" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.17.0.1)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/fpscores.pkl.gz" "/home/opam/.opam/5.1/bin/fpscores.pkl.gz" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.17.0.1)
-> installed molenc.17.0.1
Processing 106/107: [oranger: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "oranger" "-j" "71" (CWD=/home/opam/.opam/5.1/.opam-switch/build/oranger.4.3.5)
Processing 106/107: [oranger: tar xzf]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "tar" "xzf" "0.9.11.tar.gz" (CWD=/home/opam/.opam/5.1/.opam-switch/build/oranger.4.3.5)
Processing 106/107: [oranger: mkdir]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "mkdir" "ranger-0.9.11/cpp_version/build" (CWD=/home/opam/.opam/5.1/.opam-switch/build/oranger.4.3.5)
Processing 106/107: [oranger: sh]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "sh" "-c" "cd ranger-0.9.11/cpp_version/build && cmake ../" (CWD=/home/opam/.opam/5.1/.opam-switch/build/oranger.4.3.5)
- CMake Warning (dev) at CMakeLists.txt:1 (project):
-   cmake_minimum_required() should be called prior to this top-level project()
-   call.  Please see the cmake-commands(7) manual for usage documentation of
-   both commands.
- This warning is for project developers.  Use -Wno-dev to suppress it.
- 
- -- The C compiler identification is GNU 13.2.0
- -- The CXX compiler identification is GNU 13.2.0
- -- Detecting C compiler ABI info
- -- Detecting C compiler ABI info - done
- -- Check for working C compiler: /usr/bin/cc - skipped
- -- Detecting C compile features
- -- Detecting C compile features - done
- -- Detecting CXX compiler ABI info
- -- Detecting CXX compiler ABI info - done
- -- Check for working CXX compiler: /usr/bin/c++ - skipped
- -- Detecting CXX compile features
- -- Detecting CXX compile features - done
- CMake Warning (dev) at CMakeLists.txt:2 (cmake_minimum_required):
-   Compatibility with CMake < 2.4 is not supported by CMake >= 3.0.
- This warning is for project developers.  Use -Wno-dev to suppress it.
- 
- CMake Deprecation Warning at CMakeLists.txt:2 (cmake_minimum_required):
-   Compatibility with CMake < 3.10 will be removed from a future version of
-   CMake.
- 
-   Update the VERSION argument <min> value.  Or, use the <min>...<max> syntax
-   to tell CMake that the project requires at least <min> but has been updated
-   to work with policies introduced by <max> or earlier.
- 
- 
- -- Performing Test COMPILER_SUPPORTS_CXX11
- -- Performing Test COMPILER_SUPPORTS_CXX11 - Success
- Compiler with C++11 support found.
- -- Configuring done (1.1s)
- -- Generating done (0.0s)
- -- Build files have been written to: /home/opam/.opam/5.1/.opam-switch/build/oranger.4.3.5/ranger-0.9.11/cpp_version/build
Processing 106/107: [oranger: make]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "make" "-C" "ranger-0.9.11/cpp_version/build" (CWD=/home/opam/.opam/5.1/.opam-switch/build/oranger.4.3.5)
- make: Entering directory '/home/opam/.opam/5.1/.opam-switch/build/oranger.4.3.5/ranger-0.9.11/cpp_version/build'
- make[1]: Entering directory '/home/opam/.opam/5.1/.opam-switch/build/oranger.4.3.5/ranger-0.9.11/cpp_version/build'
- make[2]: Entering directory '/home/opam/.opam/5.1/.opam-switch/build/oranger.4.3.5/ranger-0.9.11/cpp_version/build'
- make[2]: Leaving directory '/home/opam/.opam/5.1/.opam-switch/build/oranger.4.3.5/ranger-0.9.11/cpp_version/build'
- make[2]: Entering directory '/home/opam/.opam/5.1/.opam-switch/build/oranger.4.3.5/ranger-0.9.11/cpp_version/build'
- [  5%] Building CXX object CMakeFiles/ranger.dir/src/Forest/Forest.o
- [ 11%] Building CXX object CMakeFiles/ranger.dir/src/Forest/ForestClassification.o
- [ 17%] Building CXX object CMakeFiles/ranger.dir/src/Forest/ForestProbability.o
- [ 23%] Building CXX object CMakeFiles/ranger.dir/src/Forest/ForestRegression.o
- [ 29%] Building CXX object CMakeFiles/ranger.dir/src/Forest/ForestSurvival.o
- [ 35%] Building CXX object CMakeFiles/ranger.dir/src/Tree/Tree.o
- [ 41%] Building CXX object CMakeFiles/ranger.dir/src/Tree/TreeClassification.o
- [ 47%] Building CXX object CMakeFiles/ranger.dir/src/Tree/TreeProbability.o
- [ 52%] Building CXX object CMakeFiles/ranger.dir/src/Tree/TreeRegression.o
- [ 58%] Building CXX object CMakeFiles/ranger.dir/src/Tree/TreeSurvival.o
- [ 64%] Building CXX object CMakeFiles/ranger.dir/src/main.o
- [ 70%] Building CXX object CMakeFiles/ranger.dir/src/utility/ArgumentHandler.o
- [ 76%] Building CXX object CMakeFiles/ranger.dir/src/utility/Data.o
- [ 82%] Building CXX object CMakeFiles/ranger.dir/src/utility/DataChar.o
- [ 88%] Building CXX object CMakeFiles/ranger.dir/src/utility/DataFloat.o
- [ 94%] Building CXX object CMakeFiles/ranger.dir/src/utility/utility.o
- [100%] Linking CXX executable ranger
- make[2]: Leaving directory '/home/opam/.opam/5.1/.opam-switch/build/oranger.4.3.5/ranger-0.9.11/cpp_version/build'
- [100%] Built target ranger
- make[1]: Leaving directory '/home/opam/.opam/5.1/.opam-switch/build/oranger.4.3.5/ranger-0.9.11/cpp_version/build'
- make: Leaving directory '/home/opam/.opam/5.1/.opam-switch/build/oranger.4.3.5/ranger-0.9.11/cpp_version/build'
-> compiled  oranger.4.3.5
Processing 107/107: [oranger: cp]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "ranger-0.9.11/cpp_version/build/ranger" "/home/opam/.opam/5.1/bin/ml_rf_ranger" (CWD=/home/opam/.opam/5.1/.opam-switch/build/oranger.4.3.5)
-> installed oranger.4.3.5
Done.
# Run eval $(opam env) to update the current shell environment
2025-01-15 18:16.30 ---> saved as "09203470703673d6fa28c10e3c2c6f0dc52049538b50f01de80f21963f5e9338"
Job succeeded