Building on x86-bm-c1.sw.ocaml.org
(from ocaml/opam:debian-unstable)
Unable to find image 'ocaml/opam:debian-unstable' locally
debian-unstable: Pulling from ocaml/opam
Digest: sha256:89df21cca807fa87b4b2f289b786c2274be7311ffc6c6f947386d1042094600a
Status: Downloaded newer image for ocaml/opam:debian-unstable
2025-05-23 05:13.43 ---> using "0acd5aeaa8f7bc314514d9795d14a7f12ec72a6a5b11c5904350189734c6859b" from cache
/: (user (uid 1000) (gid 1000))
/: (env OPAMPRECISETRACKING 1)
/: (env OPAMUTF8 never)
/: (env OPAMEXTERNALSOLVER builtin-0install)
/: (env OPAMCRITERIA +removed)
/: (env CI true)
/: (env OPAM_HEALTH_CHECK_CI true)
/: (run (shell "sudo ln -f /usr/bin/opam-dev /usr/bin/opam"))
2025-05-23 05:13.43 ---> using "40df4fa4cdfc68a5fa7a326047e82a7adc5df52b8059d4a7b745bdd50aad56e7" from cache
/: (run (network host)
(shell "rm -rf ~/opam-repository && git clone -q 'https://github.com/ocaml/opam-repository' ~/opam-repository && git -C ~/opam-repository checkout -q d4d1aa63ab7830b868cb8cbd85e076c699d8eb06"))
2025-05-23 05:13.43 ---> using "9dd08d1070d43bd32b9bd541b7c80c489e99c8b764fe1cf09cf53dcf45faae9d" from cache
/: (run (shell "rm -rf ~/.opam && opam init -ya --bare --config ~/.opamrc-sandbox ~/opam-repository"))
Configuring from /home/opam/.opamrc-sandbox, then /home/opam/.opamrc, and finally from built-in defaults.
Checking for available remotes: rsync and local, git.
- you won't be able to use mercurial repositories unless you install the hg command on your system.
- you won't be able to use darcs repositories unless you install the darcs command on your system.
<><> Fetching repository information ><><><><><><><><><><><><><><><><><><><><><>
[default] Initialised
User configuration:
~/.profile is already up-to-date.
[NOTE] Make sure that ~/.profile is well sourced in your ~/.bashrc.
2025-05-23 05:13.43 ---> using "d921eb389f66f97f3cd81fad6e72bfcbf285b9f49ad655f05bd4f22ef863e39d" from cache
/: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam switch create --repositories=default '4.13' '4.13.1'"))
<><> Installing new switch packages <><><><><><><><><><><><><><><><><><><><><><>
Switch invariant: ["ocaml-base-compiler" {= "4.13.1"}]
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved ocaml-config.2 (cached)
-> installed base-bigarray.base
-> installed base-threads.base
-> installed base-unix.base
-> installed ocaml-options-vanilla.1
-> retrieved ocaml-base-compiler.4.13.1 (cached)
-> installed ocaml-base-compiler.4.13.1
-> installed ocaml-config.2
-> installed ocaml.4.13.1
Done.
# To update the current shell environment, run: eval $(opam env --switch=4.13)
2025-05-23 05:13.43 ---> using "d9aafba7c4dd6b4067c1285cca78c89e4cd86f2401291b4a82d9607d1cdf8575" from cache
/: (run (network host)
(shell "opam update --depexts"))
+ /usr/bin/sudo "apt-get" "update"
- Get:1 http://deb.debian.org/debian unstable InRelease [208 kB]
- Get:2 http://deb.debian.org/debian unstable/main amd64 Packages.diff/Index [63.6 kB]
- Get:3 http://deb.debian.org/debian unstable/main amd64 Packages T-2025-05-22-2015.53-F-2025-05-18-2007.08.pdiff [127 kB]
- Get:3 http://deb.debian.org/debian unstable/main amd64 Packages T-2025-05-22-2015.53-F-2025-05-18-2007.08.pdiff [127 kB]
- Fetched 399 kB in 3s (146 kB/s)
- Reading package lists...
-
2025-05-23 05:13.43 ---> using "1e4591fca6119f35d660ee51123e4f0492718356dac81d7b612f63eaf693f75a" from cache
/: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam remove -y conf-rdkit.1\
\nopam install -vy conf-rdkit.1\
\nres=$?\
\nif [ $res = 31 ]; then\
\n if opam show -f x-ci-accept-failures: conf-rdkit.1 | grep -q 'debian-unstable'; then\
\n echo \"This package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\"\
\n exit 69\
\n fi\
\nfi \
\n\
\n\
\nexit $res"))
[NOTE] conf-rdkit.1 is not installed.
Nothing to do.
The following actions will be performed:
=== install 1 package
- install conf-rdkit 1
The following system packages will first need to be installed:
librdkit-dev python3-rdkit
<><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><>
opam believes some required external dependencies are missing. opam can:
> 1. Run apt-get to install them (may need root/sudo access)
2. Display the recommended apt-get command and wait while you run it manually (e.g. in another terminal)
3. Continue anyway, and, upon success, permanently register that this external dependency is present, but not detectable
4. Abort the installation
[1/2/3/4] 1
+ /usr/bin/sudo "apt-get" "install" "-qq" "-yy" "librdkit-dev" "python3-rdkit"
- Preconfiguring packages ...
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- Selecting previously unselected package libreadline8t64:amd64.
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- Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64'
- Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64'
- Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64'
- Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64'
- Unpacking libreadline8t64:amd64 (8.2-6) ...
- Selecting previously unselected package libpython3.13-stdlib:amd64.
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- Unpacking python3.13 (3.13.3-4) ...
- Selecting previously unselected package libpython3-stdlib:amd64.
- Preparing to unpack .../6-libpython3-stdlib_3.13.3-1_amd64.deb ...
- Unpacking libpython3-stdlib:amd64 (3.13.3-1) ...
- Setting up python3-minimal (3.13.3-1) ...
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- Preparing to unpack .../00-python3_3.13.3-1_amd64.deb ...
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- Selecting previously unselected package liblapack3:amd64.
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- Selecting previously unselected package libxrender1:amd64.
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- Selecting previously unselected package libcairo2:amd64.
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- Unpacking libcairo2:amd64 (1.18.4-1+b1) ...
- Selecting previously unselected package libcoordgen3:amd64.
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- Unpacking libcoordgen3:amd64 (3.0.2-1+b2) ...
- Selecting previously unselected package libinchi1.07.
- Preparing to unpack .../23-libinchi1.07_1.07.3+dfsg-1_amd64.deb ...
- Unpacking libinchi1.07 (1.07.3+dfsg-1) ...
- Selecting previously unselected package libmaeparser1:amd64.
- Preparing to unpack .../24-libmaeparser1_1.3.1-1+b2_amd64.deb ...
- Unpacking libmaeparser1:amd64 (1.3.1-1+b2) ...
- Selecting previously unselected package librdkit1t64.
- Preparing to unpack .../25-librdkit1t64_202503.1-4_amd64.deb ...
- Unpacking librdkit1t64 (202503.1-4) ...
- Selecting previously unselected package librdkit-dev.
- Preparing to unpack .../26-librdkit-dev_202503.1-4_amd64.deb ...
- Unpacking librdkit-dev (202503.1-4) ...
- Selecting previously unselected package rdkit-data.
- Preparing to unpack .../27-rdkit-data_202503.1-4_all.deb ...
- Unpacking rdkit-data (202503.1-4) ...
- Selecting previously unselected package python3-rdkit.
- Preparing to unpack .../28-python3-rdkit_202503.1-4_amd64.deb ...
- Unpacking python3-rdkit (202503.1-4) ...
- Setting up media-types (13.0.0) ...
- Setting up libboost-python1.83.0 (1.83.0-4.2) ...
- Setting up libpixman-1-0:amd64 (0.44.0-3) ...
- Setting up libxrender1:amd64 (1:0.9.12-1) ...
- Setting up libxcb-render0:amd64 (1.17.0-2+b1) ...
- Setting up fonts-freefont-ttf (20211204+svn4273-2) ...
- Setting up libxcb-shm0:amd64 (1.17.0-2+b1) ...
- Setting up rdkit-data (202503.1-4) ...
- Setting up libboost-serialization1.83.0:amd64 (1.83.0-4.2) ...
- Setting up libboost-numpy1.83.0 (1.83.0-4.2) ...
- Setting up libblas3:amd64 (3.12.1-2) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
- Setting up libboost-iostreams1.83.0:amd64 (1.83.0-4.2) ...
- Setting up fonts-dejavu-mono (2.37-8) ...
- Setting up libpng16-16t64:amd64 (1.6.48-1) ...
- Setting up python3-numpy-dev:amd64 (1:2.2.4+ds-1) ...
- Setting up fonts-dejavu-core (2.37-8) ...
- Setting up libgfortran5:amd64 (14.2.0-19) ...
- Setting up libcoordgen3:amd64 (3.0.2-1+b2) ...
- Setting up libinchi1.07 (1.07.3+dfsg-1) ...
- Setting up readline-common (8.2-6) ...
- Setting up liblapack3:amd64 (3.12.1-2) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
- Setting up fontconfig-config (2.15.0-2.3) ...
- Setting up libmaeparser1:amd64 (1.3.1-1+b2) ...
- Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ...
- Setting up libreadline8t64:amd64 (8.2-6) ...
- Setting up libfontconfig1:amd64 (2.15.0-2.3) ...
- Setting up libpython3.13-stdlib:amd64 (3.13.3-4) ...
- Setting up libpython3-stdlib:amd64 (3.13.3-1) ...
- Setting up python3.13 (3.13.3-4) ...
- Setting up python3 (3.13.3-1) ...
- running python rtupdate hooks for python3.13...
- running python post-rtupdate hooks for python3.13...
- Setting up libcairo2:amd64 (1.18.4-1+b1) ...
- Setting up python3-numpy (1:2.2.4+ds-1) ...
- Setting up librdkit1t64 (202503.1-4) ...
- Setting up python3-rdkit (202503.1-4) ...
- Setting up librdkit-dev (202503.1-4) ...
- Processing triggers for libc-bin (2.41-8) ...
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved conf-rdkit.1 (cached)
Processing 2/3: [conf-rdkit: sh]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "sh" "-c" "c++ test.cpp -o test -I/usr/include/rdkit -lRDKitRDGeneral -DSWIG || c++ test.cpp -o test -I/usr/include/rdkit -lRDGeneral -DSWIG" (CWD=/home/opam/.opam/4.13/.opam-switch/build/conf-rdkit.1)
Processing 2/3: [conf-rdkit: ./test]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "./test" (CWD=/home/opam/.opam/4.13/.opam-switch/build/conf-rdkit.1)
- 2025.03.1
-> compiled conf-rdkit.1
-> installed conf-rdkit.1
Done.
# To update the current shell environment, run: eval $(opam env)
2025-05-23 05:14.03 ---> saved as "5f3530d06714f6dc2ae7a0d41656095ae38becf9d408816b35b414a8c367afe7"
Job succeeded
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