Building on clete
(from ocaml/opam:debian-12)
2025-10-23 16:56.49 ---> using "3551d9ed2d69f19aec1e4e931b1f046c3436a7d1cffba906f040bcef59cc3f6d" from cache
/: (user (uid 1000) (gid 1000))
/: (env OPAMPRECISETRACKING 1)
/: (env OPAMUTF8 never)
/: (env OPAMEXTERNALSOLVER builtin-0install)
/: (env OPAMCRITERIA +removed)
/: (env CI true)
/: (env OPAM_HEALTH_CHECK_CI true)
/: (run (shell "sudo ln -f /usr/bin/opam-dev /usr/bin/opam"))
2025-10-23 16:56.49 ---> using "ee98a3b74cf685b158a24abe5d8f69cc8831775c32f916dac90643d1e3693e5c" from cache
/: (run (network host)
(shell "rm -rf ~/opam-repository && git clone -q 'https://github.com/ocaml/opam-repository' ~/opam-repository && git -C ~/opam-repository checkout -q 5bf570252bd9fee71938b828ca0b86573c1e3355"))
2025-10-23 16:56.49 ---> using "434b1b669376d3b88174e87d32f1bdcd7c0791cd426e88f697a526998f081125" from cache
/: (run (shell "rm -rf ~/.opam && opam init -ya --bare --config ~/.opamrc-sandbox ~/opam-repository"))
Configuring from /home/opam/.opamrc-sandbox, then /home/opam/.opamrc, and finally from built-in defaults.
Checking for available remotes: rsync and local, git.
- you won't be able to use mercurial repositories unless you install the hg command on your system.
- you won't be able to use darcs repositories unless you install the darcs command on your system.
<><> Fetching repository information ><><><><><><><><><><><><><><><><><><><><><>
[default] Initialised
User configuration:
~/.profile is already up-to-date.
2025-10-23 16:56.49 ---> using "b8b19d77cfcfbeb85030778b327c4efa12ef84543ed5f1b93d7194796b4e5913" from cache
/: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam switch create --repositories=default '5.0' '5.0.0'"))
<><> Installing new switch packages <><><><><><><><><><><><><><><><><><><><><><>
Switch invariant: ["ocaml-base-compiler" {= "5.0.0"}]
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved ocaml-config.3 (cached)
-> installed base-bigarray.base
-> installed base-threads.base
-> installed base-unix.base
-> installed ocaml-options-vanilla.1
-> retrieved ocaml-base-compiler.5.0.0 (cached)
-> installed ocaml-base-compiler.5.0.0
-> installed ocaml-config.3
-> installed ocaml.5.0.0
-> installed base-domains.base
-> installed base-nnp.base
Done.
# To update the current shell environment, run: eval $(opam env --switch=5.0)
2025-10-23 16:56.49 ---> using "f30e527654c48027fff2e2960393ab15f97835573de269e7099e500086f147c5" from cache
/: (run (network host)
(shell "opam update --depexts"))
+ /usr/bin/sudo "apt-get" "update"
- Hit:1 http://deb.debian.org/debian bookworm InRelease
- Get:2 http://deb.debian.org/debian bookworm-updates InRelease [55.4 kB]
- Get:3 http://deb.debian.org/debian-security bookworm-security InRelease [48.0 kB]
- Get:4 http://deb.debian.org/debian-security bookworm-security/main amd64 Packages [283 kB]
- Fetched 386 kB in 1s (714 kB/s)
- Reading package lists...
-
2025-10-23 16:56.49 ---> using "56bb09e5bb200d019d0dc318edfebf43cd1204a3835047de9bd7c4dac93712f7" from cache
/: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam remove -y rankers.2.0.9\
\nopam install -vy rankers.2.0.9\
\nres=$?\
\nif [ $res = 31 ]; then\
\n if opam show -f x-ci-accept-failures: rankers.2.0.9 | grep -q 'debian-12'; then\
\n echo \"This package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\"\
\n exit 69\
\n fi\
\nfi \
\n\
\n\
\nexit $res"))
Nothing to do.
[NOTE] rankers.2.0.9 is not installed.
The following actions will be performed:
=== install 37 packages
- install base-bytes base [required by dokeysto]
- install batteries 3.10.0 [required by rankers]
- install bst 7.1.0 [required by rankers]
- install camlp-streams 5.0.1 [required by batteries]
- install conf-autoconf 0.2 [required by cpu]
- install conf-gnuplot 0.1 [required by rankers]
- install conf-graphviz 0.1 [required by molenc]
- install conf-nlopt 1 [required by nlopt]
- install conf-pkg-config 4 [required by conf-nlopt]
- install conf-python-3 9.0.0 [required by molenc]
- install conf-rdkit 1 [required by molenc]
- install cpm 12.2.0 [required by rankers]
- install cpu 2.0.0 [required by parany]
- install csexp 1.5.2 [required by dune-configurator]
- install dokeysto 4.0.2 [required by molenc]
- install dolog 6.0.0 [required by rankers]
- install dune 3.20.2 [required by rankers]
- install dune-configurator 3.20.2 [required by extunix]
- install extunix 0.4.4 [required by dokeysto]
- install line_oriented 1.3.0 [required by molenc]
- install minicli 5.0.2 [required by rankers]
- install molenc 16.17.1 [required by rankers]
- install nlopt 0.7.0 [required by nlopt-ocaml]
- install nlopt-ocaml transition [required by rankers]
- install num 1.6 [required by batteries]
- install ocaml-compiler-libs v0.12.4 [required by ppxlib]
- install ocamlfind 1.9.8 [required by batteries]
- install ocamlgraph 2.2.0 [required by molenc]
- install parany 14.0.1 [required by rankers]
- install ppx_derivers 1.2.1 [required by ppxlib]
- install ppxlib 0.37.0 [required by extunix]
- install pyml 20250807 [required by molenc]
- install rankers 2.0.9
- install sexplib0 v0.17.0 [required by ppxlib]
- install stdcompat 21.1 [required by pyml]
- install stdlib-shims 0.3.0 [required by ppxlib]
- install vector3 1.0.0 [required by molenc]
The following system packages will first need to be installed:
autoconf gnuplot-x11 graphviz libnlopt-dev librdkit-dev pkg-config python3 python3-rdkit
<><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><>
opam believes some required external dependencies are missing. opam can:
> 1. Run apt-get to install them (may need root/sudo access)
2. Display the recommended apt-get command and wait while you run it manually (e.g. in another terminal)
3. Continue anyway, and, upon success, permanently register that this external dependency is present, but not detectable
4. Abort the installation
[1/2/3/4] 1
+ /usr/bin/sudo "apt-get" "install" "-qq" "-yy" "autoconf" "gnuplot-x11" "graphviz" "libnlopt-dev" "librdkit-dev" "pkg-config" "python3" "python3-rdkit"
- debconf: delaying package configuration, since apt-utils is not installed
- Selecting previously unselected package libargon2-1:amd64.
- (Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 18784 files and directories currently installed.)
- Preparing to unpack .../00-libargon2-1_0~20171227-0.3+deb12u1_amd64.deb ...
- Unpacking libargon2-1:amd64 (0~20171227-0.3+deb12u1) ...
- Selecting previously unselected package dmsetup.
- Preparing to unpack .../01-dmsetup_2%3a1.02.185-2_amd64.deb ...
- Unpacking dmsetup (2:1.02.185-2) ...
- Selecting previously unselected package libdevmapper1.02.1:amd64.
- Preparing to unpack .../02-libdevmapper1.02.1_2%3a1.02.185-2_amd64.deb ...
- Unpacking libdevmapper1.02.1:amd64 (2:1.02.185-2) ...
- Selecting previously unselected package libjson-c5:amd64.
- Preparing to unpack .../03-libjson-c5_0.16-2_amd64.deb ...
- Unpacking libjson-c5:amd64 (0.16-2) ...
- Selecting previously unselected package libcryptsetup12:amd64.
- Preparing to unpack .../04-libcryptsetup12_2%3a2.6.1-4~deb12u2_amd64.deb ...
- Unpacking libcryptsetup12:amd64 (2:2.6.1-4~deb12u2) ...
- Selecting previously unselected package libfdisk1:amd64.
- Preparing to unpack .../05-libfdisk1_2.38.1-5+deb12u3_amd64.deb ...
- Unpacking libfdisk1:amd64 (2.38.1-5+deb12u3) ...
- Selecting previously unselected package libkmod2:amd64.
- Preparing to unpack .../06-libkmod2_30+20221128-1_amd64.deb ...
- Unpacking libkmod2:amd64 (30+20221128-1) ...
- Selecting previously unselected package libapparmor1:amd64.
- Preparing to unpack .../07-libapparmor1_3.0.8-3_amd64.deb ...
- Unpacking libapparmor1:amd64 (3.0.8-3) ...
- Selecting previously unselected package libip4tc2:amd64.
- Preparing to unpack .../08-libip4tc2_1.8.9-2_amd64.deb ...
- Unpacking libip4tc2:amd64 (1.8.9-2) ...
- Selecting previously unselected package libsystemd-shared:amd64.
- Preparing to unpack .../09-libsystemd-shared_252.39-1~deb12u1_amd64.deb ...
- Unpacking libsystemd-shared:amd64 (252.39-1~deb12u1) ...
- Selecting previously unselected package systemd.
- Preparing to unpack .../10-systemd_252.39-1~deb12u1_amd64.deb ...
- Unpacking systemd (252.39-1~deb12u1) ...
- Setting up libargon2-1:amd64 (0~20171227-0.3+deb12u1) ...
- Setting up libjson-c5:amd64 (0.16-2) ...
- Setting up libfdisk1:amd64 (2.38.1-5+deb12u3) ...
- Setting up libkmod2:amd64 (30+20221128-1) ...
- Setting up libapparmor1:amd64 (3.0.8-3) ...
- Setting up libip4tc2:amd64 (1.8.9-2) ...
- Setting up libsystemd-shared:amd64 (252.39-1~deb12u1) ...
- Setting up libdevmapper1.02.1:amd64 (2:1.02.185-2) ...
- Setting up libcryptsetup12:amd64 (2:2.6.1-4~deb12u2) ...
- Setting up systemd (252.39-1~deb12u1) ...
- Created symlink /etc/systemd/system/getty.target.wants/getty@tty1.service → /lib/systemd/system/getty@.service.
- Created symlink /etc/systemd/system/multi-user.target.wants/remote-fs.target → /lib/systemd/system/remote-fs.target.
- Created symlink /etc/systemd/system/sysinit.target.wants/systemd-pstore.service → /lib/systemd/system/systemd-pstore.service.
- Initializing machine ID from random generator.
- Creating group 'systemd-journal' with GID 999.
- Creating group 'systemd-network' with GID 998.
- Creating user 'systemd-network' (systemd Network Management) with UID 998 and GID 998.
- Setting up dmsetup (2:1.02.185-2) ...
- Selecting previously unselected package systemd-sysv.
- (Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19700 files and directories currently installed.)
- Preparing to unpack .../0-systemd-sysv_252.39-1~deb12u1_amd64.deb ...
- Unpacking systemd-sysv (252.39-1~deb12u1) ...
- Selecting previously unselected package libdbus-1-3:amd64.
- Preparing to unpack .../1-libdbus-1-3_1.14.10-1~deb12u1_amd64.deb ...
- Unpacking libdbus-1-3:amd64 (1.14.10-1~deb12u1) ...
- Selecting previously unselected package dbus-bin.
- Preparing to unpack .../2-dbus-bin_1.14.10-1~deb12u1_amd64.deb ...
- Unpacking dbus-bin (1.14.10-1~deb12u1) ...
- Selecting previously unselected package dbus-session-bus-common.
- Preparing to unpack .../3-dbus-session-bus-common_1.14.10-1~deb12u1_all.deb ...
- Unpacking dbus-session-bus-common (1.14.10-1~deb12u1) ...
- Selecting previously unselected package dbus-daemon.
- Preparing to unpack .../4-dbus-daemon_1.14.10-1~deb12u1_amd64.deb ...
- Unpacking dbus-daemon (1.14.10-1~deb12u1) ...
- Selecting previously unselected package dbus-system-bus-common.
- Preparing to unpack .../5-dbus-system-bus-common_1.14.10-1~deb12u1_all.deb ...
- Unpacking dbus-system-bus-common (1.14.10-1~deb12u1) ...
- Selecting previously unselected package dbus.
- Preparing to unpack .../6-dbus_1.14.10-1~deb12u1_amd64.deb ...
- Unpacking dbus (1.14.10-1~deb12u1) ...
- Selecting previously unselected package libpython3.11-minimal:amd64.
- Preparing to unpack .../7-libpython3.11-minimal_3.11.2-6+deb12u6_amd64.deb ...
- Unpacking libpython3.11-minimal:amd64 (3.11.2-6+deb12u6) ...
- Selecting previously unselected package python3.11-minimal.
- Preparing to unpack .../8-python3.11-minimal_3.11.2-6+deb12u6_amd64.deb ...
- Unpacking python3.11-minimal (3.11.2-6+deb12u6) ...
- Setting up libpython3.11-minimal:amd64 (3.11.2-6+deb12u6) ...
- Setting up python3.11-minimal (3.11.2-6+deb12u6) ...
- Selecting previously unselected package python3-minimal.
- (Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 20098 files and directories currently installed.)
- Preparing to unpack .../python3-minimal_3.11.2-1+b1_amd64.deb ...
- Unpacking python3-minimal (3.11.2-1+b1) ...
- Selecting previously unselected package media-types.
- Preparing to unpack .../media-types_10.0.0_all.deb ...
- Unpacking media-types (10.0.0) ...
- Selecting previously unselected package libpython3.11-stdlib:amd64.
- Preparing to unpack .../libpython3.11-stdlib_3.11.2-6+deb12u6_amd64.deb ...
- Unpacking libpython3.11-stdlib:amd64 (3.11.2-6+deb12u6) ...
- Selecting previously unselected package python3.11.
- Preparing to unpack .../python3.11_3.11.2-6+deb12u6_amd64.deb ...
- Unpacking python3.11 (3.11.2-6+deb12u6) ...
- Selecting previously unselected package libpython3-stdlib:amd64.
- Preparing to unpack .../libpython3-stdlib_3.11.2-1+b1_amd64.deb ...
- Unpacking libpython3-stdlib:amd64 (3.11.2-1+b1) ...
- Setting up python3-minimal (3.11.2-1+b1) ...
- Selecting previously unselected package python3.
- (Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 20508 files and directories currently installed.)
- Preparing to unpack .../000-python3_3.11.2-1+b1_amd64.deb ...
- Unpacking python3 (3.11.2-1+b1) ...
- Selecting previously unselected package libnss-systemd:amd64.
- Preparing to unpack .../001-libnss-systemd_252.39-1~deb12u1_amd64.deb ...
- Unpacking libnss-systemd:amd64 (252.39-1~deb12u1) ...
- Selecting previously unselected package libpam-systemd:amd64.
- Preparing to unpack .../002-libpam-systemd_252.39-1~deb12u1_amd64.deb ...
- Unpacking libpam-systemd:amd64 (252.39-1~deb12u1) ...
- Selecting previously unselected package systemd-timesyncd.
- Preparing to unpack .../003-systemd-timesyncd_252.39-1~deb12u1_amd64.deb ...
- Unpacking systemd-timesyncd (252.39-1~deb12u1) ...
- Selecting previously unselected package hicolor-icon-theme.
- Preparing to unpack .../004-hicolor-icon-theme_0.17-2_all.deb ...
- Unpacking hicolor-icon-theme (0.17-2) ...
- Selecting previously unselected package libgdk-pixbuf2.0-common.
- Preparing to unpack .../005-libgdk-pixbuf2.0-common_2.42.10+dfsg-1+deb12u2_all.deb ...
- Unpacking libgdk-pixbuf2.0-common (2.42.10+dfsg-1+deb12u2) ...
- Selecting previously unselected package libglib2.0-0:amd64.
- Preparing to unpack .../006-libglib2.0-0_2.74.6-2+deb12u7_amd64.deb ...
- Unpacking libglib2.0-0:amd64 (2.74.6-2+deb12u7) ...
- Selecting previously unselected package libicu72:amd64.
- Preparing to unpack .../007-libicu72_72.1-3+deb12u1_amd64.deb ...
- Unpacking libicu72:amd64 (72.1-3+deb12u1) ...
- Selecting previously unselected package libxml2:amd64.
- Preparing to unpack .../008-libxml2_2.9.14+dfsg-1.3~deb12u4_amd64.deb ...
- Unpacking libxml2:amd64 (2.9.14+dfsg-1.3~deb12u4) ...
- Selecting previously unselected package shared-mime-info.
- Preparing to unpack .../009-shared-mime-info_2.2-1_amd64.deb ...
- Unpacking shared-mime-info (2.2-1) ...
- Selecting previously unselected package libgdk-pixbuf-2.0-0:amd64.
- Preparing to unpack .../010-libgdk-pixbuf-2.0-0_2.42.10+dfsg-1+deb12u2_amd64.deb ...
- Unpacking libgdk-pixbuf-2.0-0:amd64 (2.42.10+dfsg-1+deb12u2) ...
- Selecting previously unselected package gtk-update-icon-cache.
- Preparing to unpack .../011-gtk-update-icon-cache_3.24.38-2~deb12u3_amd64.deb ...
- Unpacking gtk-update-icon-cache (3.24.38-2~deb12u3) ...
- Selecting previously unselected package adwaita-icon-theme.
- Preparing to unpack .../012-adwaita-icon-theme_43-1_all.deb ...
- Unpacking adwaita-icon-theme (43-1) ...
- Selecting previously unselected package aglfn.
- Preparing to unpack .../013-aglfn_1.7+git20191031.4036a9c-2_all.deb ...
- Unpacking aglfn (1.7+git20191031.4036a9c-2) ...
- Selecting previously unselected package at-spi2-common.
- Preparing to unpack .../014-at-spi2-common_2.46.0-5_all.deb ...
- Unpacking at-spi2-common (2.46.0-5) ...
- Selecting previously unselected package libxi6:amd64.
- Preparing to unpack .../015-libxi6_2%3a1.8-1+b1_amd64.deb ...
- Unpacking libxi6:amd64 (2:1.8-1+b1) ...
- Selecting previously unselected package libatspi2.0-0:amd64.
- Preparing to unpack .../016-libatspi2.0-0_2.46.0-5_amd64.deb ...
- Unpacking libatspi2.0-0:amd64 (2.46.0-5) ...
- Selecting previously unselected package x11-common.
- Preparing to unpack .../017-x11-common_1%3a7.7+23_all.deb ...
- Unpacking x11-common (1:7.7+23) ...
- Selecting previously unselected package libxtst6:amd64.
- Preparing to unpack .../018-libxtst6_2%3a1.2.3-1.1_amd64.deb ...
- Unpacking libxtst6:amd64 (2:1.2.3-1.1) ...
- Selecting previously unselected package dbus-user-session.
- Preparing to unpack .../019-dbus-user-session_1.14.10-1~deb12u1_amd64.deb ...
- Unpacking dbus-user-session (1.14.10-1~deb12u1) ...
- Selecting previously unselected package libdconf1:amd64.
- Preparing to unpack .../020-libdconf1_0.40.0-4_amd64.deb ...
- Unpacking libdconf1:amd64 (0.40.0-4) ...
- Selecting previously unselected package dconf-service.
- Preparing to unpack .../021-dconf-service_0.40.0-4_amd64.deb ...
- Unpacking dconf-service (0.40.0-4) ...
- Selecting previously unselected package dconf-gsettings-backend:amd64.
- Preparing to unpack .../022-dconf-gsettings-backend_0.40.0-4_amd64.deb ...
- Unpacking dconf-gsettings-backend:amd64 (0.40.0-4) ...
- Selecting previously unselected package gsettings-desktop-schemas.
- Preparing to unpack .../023-gsettings-desktop-schemas_43.0-1_all.deb ...
- Unpacking gsettings-desktop-schemas (43.0-1) ...
- Selecting previously unselected package at-spi2-core.
- Preparing to unpack .../024-at-spi2-core_2.46.0-5_amd64.deb ...
- Unpacking at-spi2-core (2.46.0-5) ...
- Selecting previously unselected package m4.
- Preparing to unpack .../025-m4_1.4.19-3_amd64.deb ...
- Unpacking m4 (1.4.19-3) ...
- Selecting previously unselected package autoconf.
- Preparing to unpack .../026-autoconf_2.71-3_all.deb ...
- Unpacking autoconf (2.71-3) ...
- Selecting previously unselected package autotools-dev.
- Preparing to unpack .../027-autotools-dev_20220109.1_all.deb ...
- Unpacking autotools-dev (20220109.1) ...
- Selecting previously unselected package automake.
- Preparing to unpack .../028-automake_1%3a1.16.5-1.3_all.deb ...
- Unpacking automake (1:1.16.5-1.3) ...
- Selecting previously unselected package fontconfig.
- Preparing to unpack .../029-fontconfig_2.14.1-4_amd64.deb ...
- Unpacking fontconfig (2.14.1-4) ...
- Selecting previously unselected package fonts-freefont-ttf.
- Preparing to unpack .../030-fonts-freefont-ttf_20120503-10_all.deb ...
- Unpacking fonts-freefont-ttf (20120503-10) ...
- Selecting previously unselected package fonts-liberation2.
- Preparing to unpack .../031-fonts-liberation2_2.1.5-1_all.deb ...
- Unpacking fonts-liberation2 (2.1.5-1) ...
- Selecting previously unselected package gnuplot-data.
- Preparing to unpack .../032-gnuplot-data_5.4.4+dfsg1-2_all.deb ...
- Unpacking gnuplot-data (5.4.4+dfsg1-2) ...
- Selecting previously unselected package libpixman-1-0:amd64.
- Preparing to unpack .../033-libpixman-1-0_0.42.2-1_amd64.deb ...
- Unpacking libpixman-1-0:amd64 (0.42.2-1) ...
- Selecting previously unselected package libxcb-render0:amd64.
- Preparing to unpack .../034-libxcb-render0_1.15-1_amd64.deb ...
- Unpacking libxcb-render0:amd64 (1.15-1) ...
- Selecting previously unselected package libxcb-shm0:amd64.
- Preparing to unpack .../035-libxcb-shm0_1.15-1_amd64.deb ...
- Unpacking libxcb-shm0:amd64 (1.15-1) ...
- Selecting previously unselected package libxrender1:amd64.
- Preparing to unpack .../036-libxrender1_1%3a0.9.10-1.1_amd64.deb ...
- Unpacking libxrender1:amd64 (1:0.9.10-1.1) ...
- Selecting previously unselected package libcairo2:amd64.
- Preparing to unpack .../037-libcairo2_1.16.0-7_amd64.deb ...
- Unpacking libcairo2:amd64 (1.16.0-7) ...
- Selecting previously unselected package liblua5.4-0:amd64.
- Preparing to unpack .../038-liblua5.4-0_5.4.4-3+deb12u1_amd64.deb ...
- Unpacking liblua5.4-0:amd64 (5.4.4-3+deb12u1) ...
- Selecting previously unselected package libfribidi0:amd64.
- Preparing to unpack .../039-libfribidi0_1.0.8-2.1_amd64.deb ...
- Unpacking libfribidi0:amd64 (1.0.8-2.1) ...
- Selecting previously unselected package libgraphite2-3:amd64.
- Preparing to unpack .../040-libgraphite2-3_1.3.14-1_amd64.deb ...
- Unpacking libgraphite2-3:amd64 (1.3.14-1) ...
- Selecting previously unselected package libharfbuzz0b:amd64.
- Preparing to unpack .../041-libharfbuzz0b_6.0.0+dfsg-3_amd64.deb ...
- Unpacking libharfbuzz0b:amd64 (6.0.0+dfsg-3) ...
- Selecting previously unselected package libthai-data.
- Preparing to unpack .../042-libthai-data_0.1.29-1_all.deb ...
- Unpacking libthai-data (0.1.29-1) ...
- Selecting previously unselected package libdatrie1:amd64.
- Preparing to unpack .../043-libdatrie1_0.2.13-2+b1_amd64.deb ...
- Unpacking libdatrie1:amd64 (0.2.13-2+b1) ...
- Selecting previously unselected package libthai0:amd64.
- Preparing to unpack .../044-libthai0_0.1.29-1_amd64.deb ...
- Unpacking libthai0:amd64 (0.1.29-1) ...
- Selecting previously unselected package libpango-1.0-0:amd64.
- Preparing to unpack .../045-libpango-1.0-0_1.50.12+ds-1_amd64.deb ...
- Unpacking libpango-1.0-0:amd64 (1.50.12+ds-1) ...
- Selecting previously unselected package libpangoft2-1.0-0:amd64.
- Preparing to unpack .../046-libpangoft2-1.0-0_1.50.12+ds-1_amd64.deb ...
- Unpacking libpangoft2-1.0-0:amd64 (1.50.12+ds-1) ...
- Selecting previously unselected package libpangocairo-1.0-0:amd64.
- Preparing to unpack .../047-libpangocairo-1.0-0_1.50.12+ds-1_amd64.deb ...
- Unpacking libpangocairo-1.0-0:amd64 (1.50.12+ds-1) ...
- Selecting previously unselected package libpcre2-32-0:amd64.
- Preparing to unpack .../048-libpcre2-32-0_10.42-1_amd64.deb ...
- Unpacking libpcre2-32-0:amd64 (10.42-1) ...
- Selecting previously unselected package libwxbase3.2-1:amd64.
- Preparing to unpack .../049-libwxbase3.2-1_3.2.2+dfsg-2_amd64.deb ...
- Unpacking libwxbase3.2-1:amd64 (3.2.2+dfsg-2) ...
- Selecting previously unselected package libatk1.0-0:amd64.
- Preparing to unpack .../050-libatk1.0-0_2.46.0-5_amd64.deb ...
- Unpacking libatk1.0-0:amd64 (2.46.0-5) ...
- Selecting previously unselected package libatk-bridge2.0-0:amd64.
- Preparing to unpack .../051-libatk-bridge2.0-0_2.46.0-5_amd64.deb ...
- Unpacking libatk-bridge2.0-0:amd64 (2.46.0-5) ...
- Selecting previously unselected package libcairo-gobject2:amd64.
- Preparing to unpack .../052-libcairo-gobject2_1.16.0-7_amd64.deb ...
- Unpacking libcairo-gobject2:amd64 (1.16.0-7) ...
- Selecting previously unselected package liblcms2-2:amd64.
- Preparing to unpack .../053-liblcms2-2_2.14-2_amd64.deb ...
- Unpacking liblcms2-2:amd64 (2.14-2) ...
- Selecting previously unselected package libcolord2:amd64.
- Preparing to unpack .../054-libcolord2_1.4.6-2.2_amd64.deb ...
- Unpacking libcolord2:amd64 (1.4.6-2.2) ...
- Selecting previously unselected package libavahi-common-data:amd64.
- Preparing to unpack .../055-libavahi-common-data_0.8-10+deb12u1_amd64.deb ...
- Unpacking libavahi-common-data:amd64 (0.8-10+deb12u1) ...
- Selecting previously unselected package libavahi-common3:amd64.
- Preparing to unpack .../056-libavahi-common3_0.8-10+deb12u1_amd64.deb ...
- Unpacking libavahi-common3:amd64 (0.8-10+deb12u1) ...
- Selecting previously unselected package libavahi-client3:amd64.
- Preparing to unpack .../057-libavahi-client3_0.8-10+deb12u1_amd64.deb ...
- Unpacking libavahi-client3:amd64 (0.8-10+deb12u1) ...
- Selecting previously unselected package libcups2:amd64.
- Preparing to unpack .../058-libcups2_2.4.2-3+deb12u9_amd64.deb ...
- Unpacking libcups2:amd64 (2.4.2-3+deb12u9) ...
- Selecting previously unselected package libepoxy0:amd64.
- Preparing to unpack .../059-libepoxy0_1.5.10-1_amd64.deb ...
- Unpacking libepoxy0:amd64 (1.5.10-1) ...
- Selecting previously unselected package libwayland-client0:amd64.
- Preparing to unpack .../060-libwayland-client0_1.21.0-1_amd64.deb ...
- Unpacking libwayland-client0:amd64 (1.21.0-1) ...
- Selecting previously unselected package libwayland-cursor0:amd64.
- Preparing to unpack .../061-libwayland-cursor0_1.21.0-1_amd64.deb ...
- Unpacking libwayland-cursor0:amd64 (1.21.0-1) ...
- Selecting previously unselected package libwayland-egl1:amd64.
- Preparing to unpack .../062-libwayland-egl1_1.21.0-1_amd64.deb ...
- Unpacking libwayland-egl1:amd64 (1.21.0-1) ...
- Selecting previously unselected package libxcomposite1:amd64.
- Preparing to unpack .../063-libxcomposite1_1%3a0.4.5-1_amd64.deb ...
- Unpacking libxcomposite1:amd64 (1:0.4.5-1) ...
- Selecting previously unselected package libxfixes3:amd64.
- Preparing to unpack .../064-libxfixes3_1%3a6.0.0-2_amd64.deb ...
- Unpacking libxfixes3:amd64 (1:6.0.0-2) ...
- Selecting previously unselected package libxcursor1:amd64.
- Preparing to unpack .../065-libxcursor1_1%3a1.2.1-1_amd64.deb ...
- Unpacking libxcursor1:amd64 (1:1.2.1-1) ...
- Selecting previously unselected package libxdamage1:amd64.
- Preparing to unpack .../066-libxdamage1_1%3a1.1.6-1_amd64.deb ...
- Unpacking libxdamage1:amd64 (1:1.1.6-1) ...
- Selecting previously unselected package libxinerama1:amd64.
- Preparing to unpack .../067-libxinerama1_2%3a1.1.4-3_amd64.deb ...
- Unpacking libxinerama1:amd64 (2:1.1.4-3) ...
- Selecting previously unselected package xkb-data.
- Preparing to unpack .../068-xkb-data_2.35.1-1_all.deb ...
- Unpacking xkb-data (2.35.1-1) ...
- Selecting previously unselected package libxkbcommon0:amd64.
- Preparing to unpack .../069-libxkbcommon0_1.5.0-1_amd64.deb ...
- Unpacking libxkbcommon0:amd64 (1.5.0-1) ...
- Selecting previously unselected package libxrandr2:amd64.
- Preparing to unpack .../070-libxrandr2_2%3a1.5.2-2+b1_amd64.deb ...
- Unpacking libxrandr2:amd64 (2:1.5.2-2+b1) ...
- Selecting previously unselected package libgtk-3-common.
- Preparing to unpack .../071-libgtk-3-common_3.24.38-2~deb12u3_all.deb ...
- Unpacking libgtk-3-common (3.24.38-2~deb12u3) ...
- Selecting previously unselected package libgtk-3-0:amd64.
- Preparing to unpack .../072-libgtk-3-0_3.24.38-2~deb12u3_amd64.deb ...
- Unpacking libgtk-3-0:amd64 (3.24.38-2~deb12u3) ...
- Selecting previously unselected package libnotify4:amd64.
- Preparing to unpack .../073-libnotify4_0.8.1-1_amd64.deb ...
- Unpacking libnotify4:amd64 (0.8.1-1) ...
- Selecting previously unselected package libice6:amd64.
- Preparing to unpack .../074-libice6_2%3a1.0.10-1_amd64.deb ...
- Unpacking libice6:amd64 (2:1.0.10-1) ...
- Selecting previously unselected package libsm6:amd64.
- Preparing to unpack .../075-libsm6_2%3a1.2.3-1_amd64.deb ...
- Unpacking libsm6:amd64 (2:1.2.3-1) ...
- Selecting previously unselected package libwxgtk3.2-1:amd64.
- Preparing to unpack .../076-libwxgtk3.2-1_3.2.2+dfsg-2_amd64.deb ...
- Unpacking libwxgtk3.2-1:amd64 (3.2.2+dfsg-2) ...
- Selecting previously unselected package gnuplot-x11.
- Preparing to unpack .../077-gnuplot-x11_5.4.4+dfsg1-2+b2_amd64.deb ...
- Unpacking gnuplot-x11 (5.4.4+dfsg1-2+b2) ...
- Selecting previously unselected package libann0.
- Preparing to unpack .../078-libann0_1.1.2+doc-9+b1_amd64.deb ...
- Unpacking libann0 (1.1.2+doc-9+b1) ...
- Selecting previously unselected package libcdt5:amd64.
- Preparing to unpack .../079-libcdt5_2.42.2-7+deb12u1_amd64.deb ...
- Unpacking libcdt5:amd64 (2.42.2-7+deb12u1) ...
- Selecting previously unselected package libcgraph6:amd64.
- Preparing to unpack .../080-libcgraph6_2.42.2-7+deb12u1_amd64.deb ...
- Unpacking libcgraph6:amd64 (2.42.2-7+deb12u1) ...
- Selecting previously unselected package libgts-0.7-5:amd64.
- Preparing to unpack .../081-libgts-0.7-5_0.7.6+darcs121130-5+b1_amd64.deb ...
- Unpacking libgts-0.7-5:amd64 (0.7.6+darcs121130-5+b1) ...
- Selecting previously unselected package libltdl7:amd64.
- Preparing to unpack .../082-libltdl7_2.4.7-7~deb12u1_amd64.deb ...
- Unpacking libltdl7:amd64 (2.4.7-7~deb12u1) ...
- Selecting previously unselected package libpathplan4:amd64.
- Preparing to unpack .../083-libpathplan4_2.42.2-7+deb12u1_amd64.deb ...
- Unpacking libpathplan4:amd64 (2.42.2-7+deb12u1) ...
- Selecting previously unselected package libgvc6.
- Preparing to unpack .../084-libgvc6_2.42.2-7+deb12u1_amd64.deb ...
- Unpacking libgvc6 (2.42.2-7+deb12u1) ...
- Selecting previously unselected package libgvpr2:amd64.
- Preparing to unpack .../085-libgvpr2_2.42.2-7+deb12u1_amd64.deb ...
- Unpacking libgvpr2:amd64 (2.42.2-7+deb12u1) ...
- Selecting previously unselected package liblab-gamut1:amd64.
- Preparing to unpack .../086-liblab-gamut1_2.42.2-7+deb12u1_amd64.deb ...
- Unpacking liblab-gamut1:amd64 (2.42.2-7+deb12u1) ...
- Selecting previously unselected package libxt6:amd64.
- Preparing to unpack .../087-libxt6_1%3a1.2.1-1.1_amd64.deb ...
- Unpacking libxt6:amd64 (1:1.2.1-1.1) ...
- Selecting previously unselected package libxmu6:amd64.
- Preparing to unpack .../088-libxmu6_2%3a1.1.3-3_amd64.deb ...
- Unpacking libxmu6:amd64 (2:1.1.3-3) ...
- Selecting previously unselected package libxaw7:amd64.
- Preparing to unpack .../089-libxaw7_2%3a1.0.14-1_amd64.deb ...
- Unpacking libxaw7:amd64 (2:1.0.14-1) ...
- Selecting previously unselected package graphviz.
- Preparing to unpack .../090-graphviz_2.42.2-7+deb12u1_amd64.deb ...
- Unpacking graphviz (2.42.2-7+deb12u1) ...
- Selecting previously unselected package libblas3:amd64.
- Preparing to unpack .../091-libblas3_3.11.0-2_amd64.deb ...
- Unpacking libblas3:amd64 (3.11.0-2) ...
- Selecting previously unselected package libboost-iostreams1.74.0:amd64.
- Preparing to unpack .../092-libboost-iostreams1.74.0_1.74.0+ds1-21_amd64.deb ...
- Unpacking libboost-iostreams1.74.0:amd64 (1.74.0+ds1-21) ...
- Selecting previously unselected package libboost-python1.74.0.
- Preparing to unpack .../093-libboost-python1.74.0_1.74.0+ds1-21_amd64.deb ...
- Unpacking libboost-python1.74.0 (1.74.0+ds1-21) ...
- Selecting previously unselected package libboost-serialization1.74.0:amd64.
- Preparing to unpack .../094-libboost-serialization1.74.0_1.74.0+ds1-21_amd64.deb ...
- Unpacking libboost-serialization1.74.0:amd64 (1.74.0+ds1-21) ...
- Selecting previously unselected package libcoordgen3:amd64.
- Preparing to unpack .../095-libcoordgen3_3.0.1-1_amd64.deb ...
- Unpacking libcoordgen3:amd64 (3.0.1-1) ...
- Selecting previously unselected package libgdk-pixbuf2.0-bin.
- Preparing to unpack .../096-libgdk-pixbuf2.0-bin_2.42.10+dfsg-1+deb12u2_amd64.deb ...
- Unpacking libgdk-pixbuf2.0-bin (2.42.10+dfsg-1+deb12u2) ...
- Selecting previously unselected package libgfortran5:amd64.
- Preparing to unpack .../097-libgfortran5_12.2.0-14+deb12u1_amd64.deb ...
- Unpacking libgfortran5:amd64 (12.2.0-14+deb12u1) ...
- Selecting previously unselected package libglib2.0-data.
- Preparing to unpack .../098-libglib2.0-data_2.74.6-2+deb12u7_all.deb ...
- Unpacking libglib2.0-data (2.74.6-2+deb12u7) ...
- Selecting previously unselected package libgtk-3-bin.
- Preparing to unpack .../099-libgtk-3-bin_3.24.38-2~deb12u3_amd64.deb ...
- Unpacking libgtk-3-bin (3.24.38-2~deb12u3) ...
- Selecting previously unselected package libgts-bin.
- Preparing to unpack .../100-libgts-bin_0.7.6+darcs121130-5+b1_amd64.deb ...
- Unpacking libgts-bin (0.7.6+darcs121130-5+b1) ...
- Selecting previously unselected package liblapack3:amd64.
- Preparing to unpack .../101-liblapack3_3.11.0-2_amd64.deb ...
- Unpacking liblapack3:amd64 (3.11.0-2) ...
- Selecting previously unselected package libmaeparser1:amd64.
- Preparing to unpack .../102-libmaeparser1_1.3.0-1_amd64.deb ...
- Unpacking libmaeparser1:amd64 (1.3.0-1) ...
- Selecting previously unselected package libnlopt0:amd64.
- Preparing to unpack .../103-libnlopt0_2.7.1-5_amd64.deb ...
- Unpacking libnlopt0:amd64 (2.7.1-5) ...
- Selecting previously unselected package libnlopt-dev:amd64.
- Preparing to unpack .../104-libnlopt-dev_2.7.1-5_amd64.deb ...
- Unpacking libnlopt-dev:amd64 (2.7.1-5) ...
- Selecting previously unselected package libpkgconf3:amd64.
- Preparing to unpack .../105-libpkgconf3_1.8.1-1_amd64.deb ...
- Unpacking libpkgconf3:amd64 (1.8.1-1) ...
- Selecting previously unselected package libpython3.11:amd64.
- Preparing to unpack .../106-libpython3.11_3.11.2-6+deb12u6_amd64.deb ...
- Unpacking libpython3.11:amd64 (3.11.2-6+deb12u6) ...
- Selecting previously unselected package librdkit1.
- Preparing to unpack .../107-librdkit1_202209.3-1_amd64.deb ...
- Unpacking librdkit1 (202209.3-1) ...
- Selecting previously unselected package librdkit-dev.
- Preparing to unpack .../108-librdkit-dev_202209.3-1_amd64.deb ...
- Unpacking librdkit-dev (202209.3-1) ...
- Selecting previously unselected package librsvg2-2:amd64.
- Preparing to unpack .../109-librsvg2-2_2.54.7+dfsg-1~deb12u1_amd64.deb ...
- Unpacking librsvg2-2:amd64 (2.54.7+dfsg-1~deb12u1) ...
- Selecting previously unselected package librsvg2-common:amd64.
- Preparing to unpack .../110-librsvg2-common_2.54.7+dfsg-1~deb12u1_amd64.deb ...
- Unpacking librsvg2-common:amd64 (2.54.7+dfsg-1~deb12u1) ...
- Selecting previously unselected package pkgconf-bin.
- Preparing to unpack .../111-pkgconf-bin_1.8.1-1_amd64.deb ...
- Unpacking pkgconf-bin (1.8.1-1) ...
- Selecting previously unselected package pkgconf:amd64.
- Preparing to unpack .../112-pkgconf_1.8.1-1_amd64.deb ...
- Unpacking pkgconf:amd64 (1.8.1-1) ...
- Selecting previously unselected package pkg-config:amd64.
- Preparing to unpack .../113-pkg-config_1.8.1-1_amd64.deb ...
- Unpacking pkg-config:amd64 (1.8.1-1) ...
- Selecting previously unselected package python3-pkg-resources.
- Preparing to unpack .../114-python3-pkg-resources_66.1.1-1+deb12u2_all.deb ...
- Unpacking python3-pkg-resources (66.1.1-1+deb12u2) ...
- Selecting previously unselected package python3-numpy.
- Preparing to unpack .../115-python3-numpy_1%3a1.24.2-1+deb12u1_amd64.deb ...
- Unpacking python3-numpy (1:1.24.2-1+deb12u1) ...
- Selecting previously unselected package rdkit-data.
- Preparing to unpack .../116-rdkit-data_202209.3-1_all.deb ...
- Unpacking rdkit-data (202209.3-1) ...
- Selecting previously unselected package python3-rdkit.
- Preparing to unpack .../117-python3-rdkit_202209.3-1_amd64.deb ...
- Unpacking python3-rdkit (202209.3-1) ...
- Selecting previously unselected package xdg-user-dirs.
- Preparing to unpack .../118-xdg-user-dirs_0.18-1_amd64.deb ...
- Unpacking xdg-user-dirs (0.18-1) ...
- Setting up media-types (10.0.0) ...
- Setting up libgraphite2-3:amd64 (1.3.14-1) ...
- Setting up liblcms2-2:amd64 (2.14-2) ...
- Setting up libpixman-1-0:amd64 (0.42.2-1) ...
- Setting up fontconfig (2.14.1-4) ...
- Regenerating fonts cache...
- done.
- Setting up systemd-sysv (252.39-1~deb12u1) ...
- Setting up libxdamage1:amd64 (1:1.1.6-1) ...
- Setting up libicu72:amd64 (72.1-3+deb12u1) ...
- Setting up hicolor-icon-theme (0.17-2) ...
- Setting up libxi6:amd64 (2:1.8-1+b1) ...
- Setting up libxrender1:amd64 (1:0.9.10-1.1) ...
- Setting up libdatrie1:amd64 (0.2.13-2+b1) ...
- Setting up xdg-user-dirs (0.18-1) ...
- Setting up libxcb-render0:amd64 (1.15-1) ...
- Setting up libglib2.0-0:amd64 (2.74.6-2+deb12u7) ...
- Setting up libboost-iostreams1.74.0:amd64 (1.74.0+ds1-21) ...
- Setting up libpython3.11-stdlib:amd64 (3.11.2-6+deb12u6) ...
- Setting up liblab-gamut1:amd64 (2.42.2-7+deb12u1) ...
- Setting up libgdk-pixbuf2.0-common (2.42.10+dfsg-1+deb12u2) ...
- Setting up x11-common (1:7.7+23) ...
- invoke-rc.d: could not determine current runlevel
- invoke-rc.d: policy-rc.d denied execution of restart.
- Setting up fonts-freefont-ttf (20120503-10) ...
- Setting up m4 (1.4.19-3) ...
- Setting up libnss-systemd:amd64 (252.39-1~deb12u1) ...
- Setting up xkb-data (2.35.1-1) ...
- Setting up libnlopt0:amd64 (2.7.1-5) ...
- Setting up libxcb-shm0:amd64 (1.15-1) ...
- Setting up rdkit-data (202209.3-1) ...
- Setting up libcairo2:amd64 (1.16.0-7) ...
- Setting up libcolord2:amd64 (1.4.6-2.2) ...
- Setting up libmaeparser1:amd64 (1.3.0-1) ...
- Setting up libdconf1:amd64 (0.40.0-4) ...
- Setting up libgts-0.7-5:amd64 (0.7.6+darcs121130-5+b1) ...
- Setting up autotools-dev (20220109.1) ...
- Setting up libpcre2-32-0:amd64 (10.42-1) ...
- Setting up libblas3:amd64 (3.11.0-2) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
- Setting up libglib2.0-data (2.74.6-2+deb12u7) ...
- Setting up libpkgconf3:amd64 (1.8.1-1) ...
- Setting up libepoxy0:amd64 (1.5.10-1) ...
- Setting up libxfixes3:amd64 (1:6.0.0-2) ...
- Setting up fonts-liberation2 (2.1.5-1) ...
- Setting up libpathplan4:amd64 (2.42.2-7+deb12u1) ...
- Setting up aglfn (1.7+git20191031.4036a9c-2) ...
- Setting up libavahi-common-data:amd64 (0.8-10+deb12u1) ...
- Setting up libann0 (1.1.2+doc-9+b1) ...
- Setting up libdbus-1-3:amd64 (1.14.10-1~deb12u1) ...
- Setting up libfribidi0:amd64 (1.0.8-2.1) ...
- Setting up libxinerama1:amd64 (2:1.1.4-3) ...
- Setting up systemd-timesyncd (252.39-1~deb12u1) ...
- Creating group 'systemd-timesync' with GID 997.
- Creating user 'systemd-timesync' (systemd Time Synchronization) with UID 997 and GID 997.
- Created symlink /etc/systemd/system/dbus-org.freedesktop.timesync1.service → /lib/systemd/system/systemd-timesyncd.service.
- Created symlink /etc/systemd/system/sysinit.target.wants/systemd-timesyncd.service → /lib/systemd/system/systemd-timesyncd.service.
- Setting up libxrandr2:amd64 (2:1.5.2-2+b1) ...
- Setting up pkgconf-bin (1.8.1-1) ...
- Setting up libltdl7:amd64 (2.4.7-7~deb12u1) ...
- Setting up libgfortran5:amd64 (12.2.0-14+deb12u1) ...
- Setting up autoconf (2.71-3) ...
- Setting up libboost-serialization1.74.0:amd64 (1.74.0+ds1-21) ...
- Setting up at-spi2-common (2.46.0-5) ...
- Setting up dbus-session-bus-common (1.14.10-1~deb12u1) ...
- Setting up liblua5.4-0:amd64 (5.4.4-3+deb12u1) ...
- Setting up libharfbuzz0b:amd64 (6.0.0+dfsg-3) ...
- Setting up libthai-data (0.1.29-1) ...
- Setting up libcairo-gobject2:amd64 (1.16.0-7) ...
- Setting up libcdt5:amd64 (2.42.2-7+deb12u1) ...
- Setting up libatk1.0-0:amd64 (2.46.0-5) ...
- Setting up libcgraph6:amd64 (2.42.2-7+deb12u1) ...
- Setting up libwayland-egl1:amd64 (1.21.0-1) ...
- Setting up libcoordgen3:amd64 (3.0.1-1) ...
- Setting up dbus-system-bus-common (1.14.10-1~deb12u1) ...
- Setting up libboost-python1.74.0 (1.74.0+ds1-21) ...
- Setting up libnlopt-dev:amd64 (2.7.1-5) ...
- Setting up libxcomposite1:amd64 (1:0.4.5-1) ...
- Setting up libxml2:amd64 (2.9.14+dfsg-1.3~deb12u4) ...
- Setting up dbus-bin (1.14.10-1~deb12u1) ...
- Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ...
- Setting up libxkbcommon0:amd64 (1.5.0-1) ...
- Setting up libwayland-client0:amd64 (1.21.0-1) ...
- Setting up automake (1:1.16.5-1.3) ...
- update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
- Setting up gnuplot-data (5.4.4+dfsg1-2) ...
- Setting up libgts-bin (0.7.6+darcs121130-5+b1) ...
- Setting up python3.11 (3.11.2-6+deb12u6) ...
- Setting up libice6:amd64 (2:1.0.10-1) ...
- Setting up liblapack3:amd64 (3.11.0-2) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
- Setting up libpython3.11:amd64 (3.11.2-6+deb12u6) ...
- Setting up libxtst6:amd64 (2:1.2.3-1.1) ...
- Setting up librdkit1 (202209.3-1) ...
- Setting up libxcursor1:amd64 (1:1.2.1-1) ...
- Setting up libavahi-common3:amd64 (0.8-10+deb12u1) ...
- Setting up python3 (3.11.2-1+b1) ...
- running python rtupdate hooks for python3.11...
- running python post-rtupdate hooks for python3.11...
- Setting up dbus-daemon (1.14.10-1~deb12u1) ...
- Setting up libatspi2.0-0:amd64 (2.46.0-5) ...
- Setting up libwxbase3.2-1:amd64 (3.2.2+dfsg-2) ...
- Setting up pkgconf:amd64 (1.8.1-1) ...
- Setting up libatk-bridge2.0-0:amd64 (2.46.0-5) ...
- Setting up libthai0:amd64 (0.1.29-1) ...
- Setting up dbus (1.14.10-1~deb12u1) ...
- invoke-rc.d: could not determine current runlevel
- invoke-rc.d: policy-rc.d denied execution of start.
- Setting up shared-mime-info (2.2-1) ...
- Setting up librdkit-dev (202209.3-1) ...
- Setting up pkg-config:amd64 (1.8.1-1) ...
- Setting up libgvpr2:amd64 (2.42.2-7+deb12u1) ...
- Setting up libwayland-cursor0:amd64 (1.21.0-1) ...
- Setting up libpam-systemd:amd64 (252.39-1~deb12u1) ...
- Setting up libgdk-pixbuf-2.0-0:amd64 (2.42.10+dfsg-1+deb12u2) ...
- Setting up libsm6:amd64 (2:1.2.3-1) ...
- Setting up libavahi-client3:amd64 (0.8-10+deb12u1) ...
- Setting up python3-pkg-resources (66.1.1-1+deb12u2) ...
- Setting up gtk-update-icon-cache (3.24.38-2~deb12u3) ...
- Setting up libpango-1.0-0:amd64 (1.50.12+ds-1) ...
- Setting up dbus-user-session (1.14.10-1~deb12u1) ...
- Setting up adwaita-icon-theme (43-1) ...
- update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode
- Setting up libnotify4:amd64 (0.8.1-1) ...
- Setting up libxt6:amd64 (1:1.2.1-1.1) ...
- Setting up python3-numpy (1:1.24.2-1+deb12u1) ...
- Setting up libcups2:amd64 (2.4.2-3+deb12u9) ...
- Setting up libgdk-pixbuf2.0-bin (2.42.10+dfsg-1+deb12u2) ...
- Setting up libpangoft2-1.0-0:amd64 (1.50.12+ds-1) ...
- Setting up libpangocairo-1.0-0:amd64 (1.50.12+ds-1) ...
- Setting up libxmu6:amd64 (2:1.1.3-3) ...
- Setting up dconf-service (0.40.0-4) ...
- Setting up libxaw7:amd64 (2:1.0.14-1) ...
- Setting up librsvg2-2:amd64 (2.54.7+dfsg-1~deb12u1) ...
- Setting up python3-rdkit (202209.3-1) ...
- Setting up libgvc6 (2.42.2-7+deb12u1) ...
- Setting up librsvg2-common:amd64 (2.54.7+dfsg-1~deb12u1) ...
- Setting up graphviz (2.42.2-7+deb12u1) ...
- Setting up dconf-gsettings-backend:amd64 (0.40.0-4) ...
- Setting up libgtk-3-common (3.24.38-2~deb12u3) ...
- Setting up gsettings-desktop-schemas (43.0-1) ...
- Setting up libgtk-3-0:amd64 (3.24.38-2~deb12u3) ...
- Setting up libgtk-3-bin (3.24.38-2~deb12u3) ...
- Setting up at-spi2-core (2.46.0-5) ...
- Setting up libwxgtk3.2-1:amd64 (3.2.2+dfsg-2) ...
- Setting up gnuplot-x11 (5.4.4+dfsg1-2+b2) ...
- update-alternatives: using /usr/bin/gnuplot-x11 to provide /usr/bin/gnuplot (gnuplot) in auto mode
- Processing triggers for systemd (252.39-1~deb12u1) ...
- Processing triggers for libc-bin (2.36-9+deb12u13) ...
- Processing triggers for libgdk-pixbuf-2.0-0:amd64 (2.42.10+dfsg-1+deb12u2) ...
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
Processing 2/110: [batteries.3.10.0: extract]
Processing 3/110: [batteries.3.10.0: extract] [bst.7.1.0: extract]
Processing 4/110: [batteries.3.10.0: extract] [bst.7.1.0: extract] [camlp-streams.5.0.1: extract]
-> retrieved batteries.3.10.0 (cached)
Processing 4/110: [bst.7.1.0: extract] [camlp-streams.5.0.1: extract]
Processing 5/110: [bst.7.1.0: extract] [camlp-streams.5.0.1: extract]
Processing 6/110: [bst.7.1.0: extract] [camlp-streams.5.0.1: extract]
Processing 7/110: [bst.7.1.0: extract] [camlp-streams.5.0.1: extract]
Processing 8/110: [bst.7.1.0: extract] [camlp-streams.5.0.1: extract]
Processing 9/110: [bst.7.1.0: extract] [camlp-streams.5.0.1: extract]
-> retrieved conf-python-3.9.0.0 (cached)
Processing 10/110: [bst.7.1.0: extract] [camlp-streams.5.0.1: extract]
-> retrieved conf-rdkit.1 (cached)
Processing 11/110: [bst.7.1.0: extract] [camlp-streams.5.0.1: extract]
Processing 12/110: [bst.7.1.0: extract] [camlp-streams.5.0.1: extract] [cpm.12.2.0: extract]
Processing 13/110: [bst.7.1.0: extract] [camlp-streams.5.0.1: extract] [cpm.12.2.0: extract] [conf-autoconf: autoconf]
Processing 14/110: [bst.7.1.0: extract] [camlp-streams.5.0.1: extract] [cpm.12.2.0: extract] [conf-autoconf: autoconf] [conf-gnuplot: gnuplot]
Processing 15/110: [bst.7.1.0: extract] [camlp-streams.5.0.1: extract] [cpm.12.2.0: extract] [conf-autoconf: autoconf] [conf-gnuplot: gnuplot] [conf-graphviz: dot]
Processing 16/110: [bst.7.1.0: extract] [camlp-streams.5.0.1: extract] [cpm.12.2.0: extract] [conf-autoconf: autoconf] [conf-gnuplot: gnuplot] [conf-graphviz: dot] [conf-pkg-config: pkg-config]
Processing 17/110: [bst.7.1.0: extract] [camlp-streams.5.0.1: extract] [cpm.12.2.0: extract] [conf-autoconf: autoconf] [conf-gnuplot: gnuplot] [conf-graphviz: dot] [conf-pkg-config: pkg-config] [conf-python-3: python3 test.py]
Processing 18/110: [bst.7.1.0: extract] [camlp-streams.5.0.1: extract] [cpm.12.2.0: extract] [conf-autoconf: autoconf] [conf-gnuplot: gnuplot] [conf-graphviz: dot] [conf-pkg-config: pkg-config] [conf-python-3: python3 test.py] [conf-rdkit: sh]
-> retrieved bst.7.1.0 (cached)
Processing 18/110: [camlp-streams.5.0.1: extract] [cpm.12.2.0: extract] [conf-autoconf: autoconf] [conf-gnuplot: gnuplot] [conf-graphviz: dot] [conf-pkg-config: pkg-config] [conf-python-3: python3 test.py] [conf-rdkit: sh]
Processing 19/110: [camlp-streams.5.0.1: extract] [cpm.12.2.0: extract] [cpu.2.0.0: extract] [conf-autoconf: autoconf] [conf-gnuplot: gnuplot] [conf-graphviz: dot] [conf-pkg-config: pkg-config] [conf-python-3: python3 test.py] [conf-rdkit: sh]
-> retrieved camlp-streams.5.0.1 (cached)
Processing 19/110: [cpm.12.2.0: extract] [cpu.2.0.0: extract] [conf-autoconf: autoconf] [conf-gnuplot: gnuplot] [conf-graphviz: dot] [conf-pkg-config: pkg-config] [conf-python-3: python3 test.py] [conf-rdkit: sh]
Processing 20/110: [cpm.12.2.0: extract] [cpu.2.0.0: extract] [csexp.1.5.2: extract] [conf-autoconf: autoconf] [conf-gnuplot: gnuplot] [conf-graphviz: dot] [conf-pkg-config: pkg-config] [conf-python-3: python3 test.py] [conf-rdkit: sh]
-> retrieved cpm.12.2.0 (cached)
Processing 20/110: [cpu.2.0.0: extract] [csexp.1.5.2: extract] [conf-autoconf: autoconf] [conf-gnuplot: gnuplot] [conf-graphviz: dot] [conf-pkg-config: pkg-config] [conf-python-3: python3 test.py] [conf-rdkit: sh]
Processing 21/110: [cpu.2.0.0: extract] [csexp.1.5.2: extract] [dokeysto.4.0.2: extract] [conf-autoconf: autoconf] [conf-gnuplot: gnuplot] [conf-graphviz: dot] [conf-pkg-config: pkg-config] [conf-python-3: python3 test.py] [conf-rdkit: sh]
-> retrieved cpu.2.0.0 (cached)
Processing 21/110: [csexp.1.5.2: extract] [dokeysto.4.0.2: extract] [conf-autoconf: autoconf] [conf-gnuplot: gnuplot] [conf-graphviz: dot] [conf-pkg-config: pkg-config] [conf-python-3: python3 test.py] [conf-rdkit: sh]
Processing 22/110: [csexp.1.5.2: extract] [dokeysto.4.0.2: extract] [dolog.6.0.0: extract] [conf-autoconf: autoconf] [conf-gnuplot: gnuplot] [conf-graphviz: dot] [conf-pkg-config: pkg-config] [conf-python-3: python3 test.py] [conf-rdkit: sh]
-> retrieved csexp.1.5.2 (cached)
Processing 22/110: [dokeysto.4.0.2: extract] [dolog.6.0.0: extract] [conf-autoconf: autoconf] [conf-gnuplot: gnuplot] [conf-graphviz: dot] [conf-pkg-config: pkg-config] [conf-python-3: python3 test.py] [conf-rdkit: sh]
Processing 23/110: [dokeysto.4.0.2: extract] [dolog.6.0.0: extract] [dune.3.20.2, dune-configurator.3.20.2: extract] [conf-autoconf: autoconf] [conf-gnuplot: gnuplot] [conf-graphviz: dot] [conf-pkg-config: pkg-config] [conf-python-3: python3 test.py] [conf-rdkit: sh]
-> retrieved dokeysto.4.0.2 (cached)
Processing 23/110: [dolog.6.0.0: extract] [dune.3.20.2, dune-configurator.3.20.2: extract] [conf-autoconf: autoconf] [conf-gnuplot: gnuplot] [conf-graphviz: dot] [conf-pkg-config: pkg-config] [conf-python-3: python3 test.py] [conf-rdkit: sh]
Processing 24/110: [dolog.6.0.0: extract] [dune.3.20.2, dune-configurator.3.20.2: extract] [extunix.0.4.4: extract] [conf-autoconf: autoconf] [conf-gnuplot: gnuplot] [conf-graphviz: dot] [conf-pkg-config: pkg-config] [conf-python-3: python3 test.py] [conf-rdkit: sh]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dot" "-V" (CWD=/home/opam/.opam/5.0/.opam-switch/build/conf-graphviz.0.1)
- dot - graphviz version 2.43.0 (0)
-> compiled conf-graphviz.0.1
Processing 24/110: [dolog.6.0.0: extract] [dune.3.20.2, dune-configurator.3.20.2: extract] [extunix.0.4.4: extract] [conf-autoconf: autoconf] [conf-gnuplot: gnuplot] [conf-pkg-config: pkg-config] [conf-python-3: python3 test.py] [conf-rdkit: sh]
-> installed conf-graphviz.0.1
Processing 25/110: [dolog.6.0.0: extract] [dune.3.20.2, dune-configurator.3.20.2: extract] [extunix.0.4.4: extract] [conf-autoconf: autoconf] [conf-gnuplot: gnuplot] [conf-pkg-config: pkg-config] [conf-python-3: python3 test.py] [conf-rdkit: sh]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "pkg-config" "--help" (CWD=/home/opam/.opam/5.0/.opam-switch/build/conf-pkg-config.4)
- usage: pkgconf [OPTIONS] [LIBRARIES]
-
- basic options:
-
- --help this message
- --about print pkgconf version and license to stdout
- --version print supported pkg-config version to stdout
- --atleast-pkgconfig-version check whether or not pkgconf is compatible
- with a specified pkg-config version
- --errors-to-stdout print all errors on stdout instead of stderr
- --print-errors ensure all errors are printed
- --short-errors be less verbose about some errors
- --silence-errors explicitly be silent about errors
- --list-all list all known packages
- --list-package-names list all known package names
- --simulate simulate walking the calculated dependency graph
- --no-cache do not cache already seen packages when
- walking the dependency graph
- --log-file=filename write an audit log to a specified file
- --with-path=path adds a directory to the search path
- --define-prefix override the prefix variable with one that is guessed based on
- the location of the .pc file
- --dont-define-prefix do not override the prefix variable under any circumstances
- --prefix-variable=varname sets the name of the variable that pkgconf considers
- to be the package prefix
- --relocate=path relocates a path and exits (mostly for testsuite)
- --dont-relocate-paths disables path relocation support
-
- cross-compilation personality support:
-
- --personality=triplet|filename sets the personality to 'triplet' or a file named 'filename'
- --dump-personality dumps details concerning selected personality
-
- checking specific pkg-config database entries:
-
- --atleast-version require a specific version of a module
- --exact-version require an exact version of a module
- --max-version require a maximum version of a module
- --exists check whether or not a module exists
- --uninstalled check whether or not an uninstalled module will be used
- --no-uninstalled never use uninstalled modules when satisfying dependencies
- --no-provides do not use 'provides' rules to resolve dependencies
- --maximum-traverse-depth maximum allowed depth for dependency graph
- --static be more aggressive when computing dependency graph
- (for static linking)
- --shared use a simplified dependency graph (usually default)
- --pure optimize a static dependency graph as if it were a normal
- dependency graph
- --env-only look only for package entries in PKG_CONFIG_PATH
- --ignore-conflicts ignore 'conflicts' rules in modules
- --validate validate specific .pc files for correctness
-
- querying specific pkg-config database fields:
-
- --define-variable=varname=value define variable 'varname' as 'value'
- --variable=varname print specified variable entry to stdout
- --cflags print required CFLAGS to stdout
- --cflags-only-I print required include-dir CFLAGS to stdout
- --cflags-only-other print required non-include-dir CFLAGS to stdout
- --libs print required linker flags to stdout
- --libs-only-L print required LDPATH linker flags to stdout
- --libs-only-l print required LIBNAME linker flags to stdout
- --libs-only-other print required other linker flags to stdout
- --print-requires print required dependency frameworks to stdout
- --print-requires-private print required dependency frameworks for static
- linking to stdout
- --print-provides print provided dependencies to stdout
- --print-variables print all known variables in module to stdout
- --digraph print entire dependency graph in graphviz 'dot' format
- --keep-system-cflags keep -I/usr/include entries in cflags output
- --keep-system-libs keep -L/lib:/lib/i386-linux-gnu:/lib/x86_64-linux-gnu:/lib/x86_64-linux-gnux32:/lib32:/libx32:/usr/lib:/usr/lib/i386-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnux32:/usr/lib32:/usr/libx32 entries in libs output
- --path show the exact filenames for any matching .pc files
- --modversion print the specified module's version to stdout
- --internal-cflags do not filter 'internal' cflags from output
-
- filtering output:
-
- --msvc-syntax print translatable fragments in MSVC syntax
- --fragment-filter=types filter output fragments to the specified types
-
- report bugs to <https://github.com/pkgconf/pkgconf/issues/new>.
-> compiled conf-pkg-config.4
Processing 25/110: [dolog.6.0.0: extract] [dune.3.20.2, dune-configurator.3.20.2: extract] [extunix.0.4.4: extract] [conf-autoconf: autoconf] [conf-gnuplot: gnuplot] [conf-python-3: python3 test.py] [conf-rdkit: sh]
-> installed conf-pkg-config.4
Processing 26/110: [dolog.6.0.0: extract] [dune.3.20.2, dune-configurator.3.20.2: extract] [extunix.0.4.4: extract] [conf-autoconf: autoconf] [conf-gnuplot: gnuplot] [conf-python-3: python3 test.py] [conf-rdkit: sh]
Processing 27/110: [dolog.6.0.0: extract] [dune.3.20.2, dune-configurator.3.20.2: extract] [extunix.0.4.4: extract] [conf-autoconf: autoconf] [conf-gnuplot: gnuplot] [conf-nlopt: pkg-config nlopt] [conf-python-3: python3 test.py] [conf-rdkit: sh]
-> retrieved dolog.6.0.0 (cached)
Processing 27/110: [dune.3.20.2, dune-configurator.3.20.2: extract] [extunix.0.4.4: extract] [conf-autoconf: autoconf] [conf-gnuplot: gnuplot] [conf-nlopt: pkg-config nlopt] [conf-python-3: python3 test.py] [conf-rdkit: sh]
Processing 28/110: [dune.3.20.2, dune-configurator.3.20.2: extract] [extunix.0.4.4: extract] [line_oriented.1.3.0: extract] [conf-autoconf: autoconf] [conf-gnuplot: gnuplot] [conf-nlopt: pkg-config nlopt] [conf-python-3: python3 test.py] [conf-rdkit: sh]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "autoconf" "-V" (CWD=/home/opam/.opam/5.0/.opam-switch/build/conf-autoconf.0.2)
- autoconf (GNU Autoconf) 2.71
- Copyright (C) 2021 Free Software Foundation, Inc.
- License GPLv3+/Autoconf: GNU GPL version 3 or later
- <https://gnu.org/licenses/gpl.html>, <https://gnu.org/licenses/exceptions.html>
- This is free software: you are free to change and redistribute it.
- There is NO WARRANTY, to the extent permitted by law.
-
- Written by David J. MacKenzie and Akim Demaille.
-> compiled conf-autoconf.0.2
Processing 28/110: [dune.3.20.2, dune-configurator.3.20.2: extract] [extunix.0.4.4: extract] [line_oriented.1.3.0: extract] [conf-gnuplot: gnuplot] [conf-nlopt: pkg-config nlopt] [conf-python-3: python3 test.py] [conf-rdkit: sh]
-> installed conf-autoconf.0.2
Processing 29/110: [dune.3.20.2, dune-configurator.3.20.2: extract] [extunix.0.4.4: extract] [line_oriented.1.3.0: extract] [conf-gnuplot: gnuplot] [conf-nlopt: pkg-config nlopt] [conf-python-3: python3 test.py] [conf-rdkit: sh]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "python3" "test.py" (CWD=/home/opam/.opam/5.0/.opam-switch/build/conf-python-3.9.0.0)
- python-3 OK
-> compiled conf-python-3.9.0.0
Processing 29/110: [dune.3.20.2, dune-configurator.3.20.2: extract] [extunix.0.4.4: extract] [line_oriented.1.3.0: extract] [conf-gnuplot: gnuplot] [conf-nlopt: pkg-config nlopt] [conf-rdkit: sh]
-> installed conf-python-3.9.0.0
Processing 30/110: [dune.3.20.2, dune-configurator.3.20.2: extract] [extunix.0.4.4: extract] [line_oriented.1.3.0: extract] [conf-gnuplot: gnuplot] [conf-nlopt: pkg-config nlopt] [conf-rdkit: sh]
-> retrieved line_oriented.1.3.0 (cached)
Processing 30/110: [dune.3.20.2, dune-configurator.3.20.2: extract] [extunix.0.4.4: extract] [conf-gnuplot: gnuplot] [conf-nlopt: pkg-config nlopt] [conf-rdkit: sh]
Processing 31/110: [dune.3.20.2, dune-configurator.3.20.2: extract] [extunix.0.4.4: extract] [minicli.5.0.2: extract] [conf-gnuplot: gnuplot] [conf-nlopt: pkg-config nlopt] [conf-rdkit: sh]
-> retrieved minicli.5.0.2 (cached)
Processing 31/110: [dune.3.20.2, dune-configurator.3.20.2: extract] [extunix.0.4.4: extract] [conf-gnuplot: gnuplot] [conf-nlopt: pkg-config nlopt] [conf-rdkit: sh]
Processing 32/110: [dune.3.20.2, dune-configurator.3.20.2: extract] [extunix.0.4.4: extract] [molenc.16.17.1: extract] [conf-gnuplot: gnuplot] [conf-nlopt: pkg-config nlopt] [conf-rdkit: sh]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "gnuplot" "--version" (CWD=/home/opam/.opam/5.0/.opam-switch/build/conf-gnuplot.0.1)
- gnuplot 5.4 patchlevel 4
-> compiled conf-gnuplot.0.1
Processing 32/110: [dune.3.20.2, dune-configurator.3.20.2: extract] [extunix.0.4.4: extract] [molenc.16.17.1: extract] [conf-nlopt: pkg-config nlopt] [conf-rdkit: sh]
-> installed conf-gnuplot.0.1
Processing 33/110: [dune.3.20.2, dune-configurator.3.20.2: extract] [extunix.0.4.4: extract] [molenc.16.17.1: extract] [conf-nlopt: pkg-config nlopt] [conf-rdkit: sh]
-> retrieved extunix.0.4.4 (cached)
Processing 33/110: [dune.3.20.2, dune-configurator.3.20.2: extract] [molenc.16.17.1: extract] [conf-nlopt: pkg-config nlopt] [conf-rdkit: sh]
Processing 34/110: [dune.3.20.2, dune-configurator.3.20.2: extract] [molenc.16.17.1: extract] [nlopt.0.7.0: extract] [conf-nlopt: pkg-config nlopt] [conf-rdkit: sh]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "pkg-config" "--exists" "nlopt" (CWD=/home/opam/.opam/5.0/.opam-switch/build/conf-nlopt.1)
-> compiled conf-nlopt.1
Processing 34/110: [dune.3.20.2, dune-configurator.3.20.2: extract] [molenc.16.17.1: extract] [nlopt.0.7.0: extract] [conf-rdkit: sh]
-> installed conf-nlopt.1
Processing 35/110: [dune.3.20.2, dune-configurator.3.20.2: extract] [molenc.16.17.1: extract] [nlopt.0.7.0: extract] [conf-rdkit: sh]
-> retrieved molenc.16.17.1 (cached)
Processing 35/110: [dune.3.20.2, dune-configurator.3.20.2: extract] [nlopt.0.7.0: extract] [conf-rdkit: sh]
Processing 36/110: [dune.3.20.2, dune-configurator.3.20.2: extract] [nlopt.0.7.0: extract] [conf-rdkit: sh]
Processing 37/110: [dune.3.20.2, dune-configurator.3.20.2: extract] [nlopt.0.7.0: extract] [num.1.6: extract] [conf-rdkit: sh]
-> retrieved nlopt.0.7.0 (cached)
Processing 37/110: [dune.3.20.2, dune-configurator.3.20.2: extract] [num.1.6: extract] [conf-rdkit: sh]
Processing 38/110: [dune.3.20.2, dune-configurator.3.20.2: extract] [num.1.6: extract] [ocaml-compiler-libs.v0.12.4: extract] [conf-rdkit: sh]
-> retrieved num.1.6 (cached)
Processing 38/110: [dune.3.20.2, dune-configurator.3.20.2: extract] [ocaml-compiler-libs.v0.12.4: extract] [conf-rdkit: sh]
Processing 39/110: [dune.3.20.2, dune-configurator.3.20.2: extract] [ocaml-compiler-libs.v0.12.4: extract] [ocamlfind.1.9.8: extract] [conf-rdkit: sh]
Processing 40/110: [dune.3.20.2, dune-configurator.3.20.2: extract] [ocaml-compiler-libs.v0.12.4: extract] [ocamlfind.1.9.8: extract] [conf-rdkit: sh] [num: make opam-modern]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "sh" "-c" "c++ test.cpp -o test -I/usr/include/rdkit -lRDKitRDGeneral -DSWIG || c++ test.cpp -o test -I/usr/include/rdkit -lRDGeneral -DSWIG" (CWD=/home/opam/.opam/5.0/.opam-switch/build/conf-rdkit.1)
Processing 40/110: [dune.3.20.2, dune-configurator.3.20.2: extract] [ocaml-compiler-libs.v0.12.4: extract] [ocamlfind.1.9.8: extract] [conf-rdkit: ./test] [num: make opam-modern]
-> retrieved ocaml-compiler-libs.v0.12.4 (cached)
Processing 40/110: [dune.3.20.2, dune-configurator.3.20.2: extract] [ocamlfind.1.9.8: extract] [conf-rdkit: ./test] [num: make opam-modern]
Processing 41/110: [dune.3.20.2, dune-configurator.3.20.2: extract] [ocamlfind.1.9.8: extract] [ocamlgraph.2.2.0: extract] [conf-rdkit: ./test] [num: make opam-modern]
-> retrieved ocamlfind.1.9.8 (cached)
Processing 41/110: [dune.3.20.2, dune-configurator.3.20.2: extract] [ocamlgraph.2.2.0: extract] [conf-rdkit: ./test] [num: make opam-modern]
Processing 42/110: [dune.3.20.2, dune-configurator.3.20.2: extract] [ocamlgraph.2.2.0: extract] [parany.14.0.1: extract] [conf-rdkit: ./test] [num: make opam-modern]
Processing 43/110: [dune.3.20.2, dune-configurator.3.20.2: extract] [ocamlgraph.2.2.0: extract] [parany.14.0.1: extract] [conf-rdkit: ./test] [num: make opam-modern] [ocamlfind: ./configure]
-> retrieved parany.14.0.1 (cached)
Processing 43/110: [dune.3.20.2, dune-configurator.3.20.2: extract] [ocamlgraph.2.2.0: extract] [conf-rdkit: ./test] [num: make opam-modern] [ocamlfind: ./configure]
Processing 44/110: [dune.3.20.2, dune-configurator.3.20.2: extract] [ocamlgraph.2.2.0: extract] [ppx_derivers.1.2.1: extract] [conf-rdkit: ./test] [num: make opam-modern] [ocamlfind: ./configure]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "./test" (CWD=/home/opam/.opam/5.0/.opam-switch/build/conf-rdkit.1)
- 2022.09.3
-> compiled conf-rdkit.1
Processing 44/110: [dune.3.20.2, dune-configurator.3.20.2: extract] [ocamlgraph.2.2.0: extract] [ppx_derivers.1.2.1: extract] [num: make opam-modern] [ocamlfind: ./configure]
-> installed conf-rdkit.1
Processing 45/110: [dune.3.20.2, dune-configurator.3.20.2: extract] [ocamlgraph.2.2.0: extract] [ppx_derivers.1.2.1: extract] [num: make opam-modern] [ocamlfind: ./configure]
-> retrieved ppx_derivers.1.2.1 (cached)
Processing 45/110: [dune.3.20.2, dune-configurator.3.20.2: extract] [ocamlgraph.2.2.0: extract] [num: make opam-modern] [ocamlfind: ./configure]
Processing 46/110: [dune.3.20.2, dune-configurator.3.20.2: extract] [ocamlgraph.2.2.0: extract] [ppxlib.0.37.0: extract] [num: make opam-modern] [ocamlfind: ./configure]
-> retrieved ocamlgraph.2.2.0 (cached)
Processing 46/110: [dune.3.20.2, dune-configurator.3.20.2: extract] [ppxlib.0.37.0: extract] [num: make opam-modern] [ocamlfind: ./configure]
Processing 47/110: [dune.3.20.2, dune-configurator.3.20.2: extract] [ppxlib.0.37.0: extract] [pyml.20250807: extract] [num: make opam-modern] [ocamlfind: ./configure]
-> retrieved pyml.20250807 (cached)
Processing 47/110: [dune.3.20.2, dune-configurator.3.20.2: extract] [ppxlib.0.37.0: extract] [num: make opam-modern] [ocamlfind: ./configure]
Processing 48/110: [dune.3.20.2, dune-configurator.3.20.2: extract] [ppxlib.0.37.0: extract] [rankers.2.0.9: http] [num: make opam-modern] [ocamlfind: ./configure]
-> retrieved ppxlib.0.37.0 (cached)
Processing 48/110: [dune.3.20.2, dune-configurator.3.20.2: extract] [rankers.2.0.9: http] [num: make opam-modern] [ocamlfind: ./configure]
Processing 49/110: [dune.3.20.2, dune-configurator.3.20.2: extract] [rankers.2.0.9: http] [sexplib0.v0.17.0: extract] [num: make opam-modern] [ocamlfind: ./configure]
-> retrieved sexplib0.v0.17.0 (cached)
Processing 49/110: [dune.3.20.2, dune-configurator.3.20.2: extract] [rankers.2.0.9: http] [num: make opam-modern] [ocamlfind: ./configure]
Processing 50/110: [dune.3.20.2, dune-configurator.3.20.2: extract] [rankers.2.0.9: http] [stdcompat.21.1: extract] [num: make opam-modern] [ocamlfind: ./configure]
-> retrieved stdcompat.21.1 (cached)
Processing 50/110: [dune.3.20.2, dune-configurator.3.20.2: extract] [rankers.2.0.9: http] [num: make opam-modern] [ocamlfind: ./configure]
Processing 51/110: [dune.3.20.2, dune-configurator.3.20.2: extract] [rankers.2.0.9: http] [stdlib-shims.0.3.0: extract] [num: make opam-modern] [ocamlfind: ./configure]
-> retrieved dune.3.20.2, dune-configurator.3.20.2 (cached)
Processing 51/110: [rankers.2.0.9: http] [stdlib-shims.0.3.0: extract] [num: make opam-modern] [ocamlfind: ./configure]
Processing 52/110: [rankers.2.0.9: http] [stdlib-shims.0.3.0: extract] [vector3.1.0.0: extract] [num: make opam-modern] [ocamlfind: ./configure]
Processing 53/110: [rankers.2.0.9: http] [stdlib-shims.0.3.0: extract] [vector3.1.0.0: extract] [dune: ocaml 71] [num: make opam-modern] [ocamlfind: ./configure]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "make" "PROFILE=release" "opam-modern" (CWD=/home/opam/.opam/5.0/.opam-switch/build/num.1.6)
- make -C src all
- make[1]: Entering directory '/home/opam/.opam/5.0/.opam-switch/build/num.1.6/src'
- ocamlc -ccopt -DBNG_ARCH_amd64 -c bng.c
- ocamlc -ccopt -DBNG_ARCH_amd64 -c nat_stubs.c
- ocamlmklib -oc nums bng.o nat_stubs.o
- ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c int_misc.mli
- ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c int_misc.ml
- ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c nat.mli
- ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c nat.ml
- ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c big_int.mli
- ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c big_int.ml
- ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c arith_flags.mli
- ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c arith_flags.ml
- ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c ratio.mli
- ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c ratio.ml
- ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c num.mli
- ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c num.ml
- ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c arith_status.mli
- ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c arith_status.ml
- ocamlmklib -o nums -oc nums -linkall int_misc.cmo nat.cmo big_int.cmo arith_flags.cmo ratio.cmo num.cmo arith_status.cmo
- cp ../toplevel/num_top_printers.mli ../toplevel/num_top.mli ../toplevel/num_top_printers.ml ../toplevel/num_top.ml .
- ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c num_top_printers.mli
- ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c num_top_printers.ml
- ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c num_top.mli
- ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c num_top.ml
- ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -a -o num_top.cma num_top_printers.cmo num_top.cmo
- echo 'version = "1.7~dev"' > META.top
- cat META.num-top.in >> META.top
- ocamlopt -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c int_misc.ml
- ocamlopt -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c nat.ml
- ocamlopt -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c big_int.ml
- ocamlopt -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c arith_flags.ml
- ocamlopt -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c ratio.ml
- ocamlopt -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c num.ml
- ocamlopt -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c arith_status.ml
- ocamlmklib -o nums -oc nums -linkall int_misc.cmx nat.cmx big_int.cmx arith_flags.cmx ratio.cmx num.cmx arith_status.cmx
- ocamlopt -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -I . -shared -o nums.cmxs nums.cmxa
- make[1]: Leaving directory '/home/opam/.opam/5.0/.opam-switch/build/num.1.6/src'
- cp src/num-modern.install num.install
-> compiled num.1.6
Processing 53/110: [rankers.2.0.9: http] [stdlib-shims.0.3.0: extract] [vector3.1.0.0: extract] [dune: ocaml 71] [ocamlfind: ./configure]
-> installed num.1.6
Processing 54/110: [rankers.2.0.9: http] [stdlib-shims.0.3.0: extract] [vector3.1.0.0: extract] [dune: ocaml 71] [ocamlfind: ./configure]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "./configure" "-bindir" "/home/opam/.opam/5.0/bin" "-sitelib" "/home/opam/.opam/5.0/lib" "-mandir" "/home/opam/.opam/5.0/man" "-config" "/home/opam/.opam/5.0/lib/findlib.conf" "-no-custom" "-no-camlp4" (CWD=/home/opam/.opam/5.0/.opam-switch/build/ocamlfind.1.9.8)
- Welcome to findlib version 1.9.8
- Configuring core...
- Checking for #remove_directory...
- Testing threading model...
- systhread_supported: true
- Testing DLLs...
- Testing whether ppxopt can be supported...
- Checking for ocamlc -opaque...
- Checking for ocamlopt -g...
- Configuring libraries...
- unix: found (in +unix)
- dynlink: found (in +dynlink)
- bigarray: not present (possible since 4.08)
- compiler-libs: found
- dbm: not present (normal since 4.00)
- graphics: not present (normal since 4.09)
- num: not present (normal since 4.06)
- ocamlbuild: not present (normal since 4.03)
- ocamldoc: found (in +ocamldoc)
- raw_spacetime: not present (normal since 4.12)
- threads: found (in +threads)
- str: found (in +str)
- labltk: not present (normal since 4.02)
- native dynlink: found
- camlp4: disabled
- bytes: found, installing fake library
- Configuration for bytes written to site-lib-src/bytes/META
- Detecting compiler arguments: (extractor built) ok
-
- About the OCAML core installation:
- Standard library: /home/opam/.opam/5.0/lib/ocaml
- Binaries: /home/opam/.opam/5.0/bin
- Manual pages: /home/opam/.opam/5.0/man
- Multi-threading type: posix
- The directory of site-specific packages will be
- site-lib: /home/opam/.opam/5.0/lib
- The configuration file is written to:
- findlib config file: /home/opam/.opam/5.0/lib/findlib.conf
- Software will be installed:
- Libraries: in <site-lib>/findlib
- Binaries: /home/opam/.opam/5.0/bin
- Manual pages: /home/opam/.opam/5.0/man
- topfind script: /home/opam/.opam/5.0/lib/ocaml
- Topfind ppxopt support: yes
- Toolbox: no
- Link custom runtime: no
- Need bytes compatibility: no
-
- Configuration has been written to Makefile.config
-
- You can now do 'make all', and optionally 'make opt', to build ocamlfind.
Processing 54/110: [rankers.2.0.9: http] [stdlib-shims.0.3.0: extract] [vector3.1.0.0: extract] [dune: ocaml 71] [ocamlfind: make all]
Processing 54/110: [rankers.2.0.9: extract] [stdlib-shims.0.3.0: extract] [vector3.1.0.0: extract] [dune: ocaml 71] [ocamlfind: make all]
-> retrieved stdlib-shims.0.3.0 (cached)
Processing 54/110: [rankers.2.0.9: extract] [vector3.1.0.0: extract] [dune: ocaml 71] [ocamlfind: make all]
-> retrieved vector3.1.0.0 (cached)
Processing 54/110: [rankers.2.0.9: extract] [dune: ocaml 71] [ocamlfind: make all]
-> retrieved rankers.2.0.9 (https://github.com/UnixJunkie/rankers/archive/v2.0.9.tar.gz)
Processing 54/110: [dune: ocaml 71] [ocamlfind: make all]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "make" "all" (CWD=/home/opam/.opam/5.0/.opam-switch/build/ocamlfind.1.9.8)
- for p in findlib; do ( cd src/$p; make all ) || exit; done
- make[1]: Entering directory '/home/opam/.opam/5.0/.opam-switch/build/ocamlfind.1.9.8/src/findlib'
- ocamllex fl_meta.mll
- 22 states, 392 transitions, table size 1700 bytes
- USE_CYGPATH="0"; \
- export USE_CYGPATH; \
- cat findlib_config.mlp | \
- ../../tools/patch '@CONFIGFILE@' '/home/opam/.opam/5.0/lib/findlib.conf' | \
- ../../tools/patch '@STDLIB@' '/home/opam/.opam/5.0/lib/ocaml' | \
- ../../tools/patch '@RELATIVE_PATHS@' 'false' | \
- sed -e 's;@AUTOLINK@;true;g' \
- -e 's;@SYSTEM@;linux;g' \
- >findlib_config.ml
- if [ "true" = "true" ]; then \
- cp topfind.ml.in topfind.ml; \
- else \
- sed -e '/PPXOPT_BEGIN/,/PPXOPT_END/ d' topfind.ml.in \
- > topfind.ml ; \
- fi
- ocamldep *.ml *.mli >depend
- ocamlc -I +compiler-libs -opaque -I +unix -I +dynlink -g -c fl_compat.ml
- ocamlc -I +compiler-libs -opaque -I +unix -I +dynlink -g -c fl_split.ml
- ocamlc -I +compiler-libs -opaque -I +unix -I +dynlink -g -c findlib_config.ml
- ocamlc -I +compiler-libs -opaque -I +unix -I +dynlink -g -c fl_metatoken.ml
- ocamlc -I +compiler-libs -opaque -I +unix -I +dynlink -g -c fl_meta.ml
- ocamlc -I +compiler-libs -opaque -I +unix -I +dynlink -c fl_metascanner.mli
- ocamlc -I +compiler-libs -opaque -I +unix -I +dynlink -g -c fl_metascanner.ml
- ocamlc -I +compiler-libs -opaque -I +unix -I +dynlink -c fl_topo.mli
- ocamlc -I +compiler-libs -opaque -I +unix -I +dynlink -g -c fl_topo.ml
- ocamlc -I +compiler-libs -opaque -I +unix -I +dynlink -c fl_package_base.mli
- ocamlc -I +compiler-libs -opaque -I +unix -I +dynlink -g -c fl_package_base.ml
- ocamlc -I +compiler-libs -opaque -I +unix -I +dynlink -c findlib.mli
- ocamlc -I +compiler-libs -opaque -I +unix -I +dynlink -g -c findlib.ml
- ocamlc -I +compiler-libs -opaque -I +unix -I +dynlink -g -c fl_args.ml
- ocamlc -I +compiler-libs -opaque -I +unix -I +dynlink -g -c fl_lint.ml
- ocamlc -I +compiler-libs -a -o findlib.cma fl_compat.cmo fl_split.cmo findlib_config.cmo fl_metatoken.cmo fl_meta.cmo fl_metascanner.cmo fl_topo.cmo fl_package_base.cmo findlib.cmo fl_args.cmo fl_lint.cmo
- ocamlc -I +compiler-libs -opaque -I +unix -I +dynlink -g -c ocaml_args.ml
- ocamlc -I +compiler-libs -opaque -I +unix -I +dynlink -g -c frontend.ml
- ocamlc -I +compiler-libs -o ocamlfind -g findlib.cma unix.cma \
- -I +unix -I +dynlink ocaml_args.cmo frontend.cmo
- ocamlc -I +compiler-libs -opaque -I +unix -I +dynlink -c topfind.mli
- ocamlc -I +compiler-libs -opaque -I +unix -I +dynlink -g -c topfind.ml
- File "topfind.ml", line 128, characters 40-63:
- 128 | match Hashtbl.find Toploop.directive_table "ppx" with
- ^^^^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: Toploop.directive_table
- File "topfind.ml", line 258, characters 4-27:
- 258 | Toploop.directive_table
- ^^^^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: Toploop.directive_table
- File "topfind.ml", line 268, characters 4-27:
- 268 | Toploop.directive_table
- ^^^^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: Toploop.directive_table
- File "topfind.ml", line 280, characters 4-27:
- 280 | Toploop.directive_table
- ^^^^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: Toploop.directive_table
- File "topfind.ml", line 293, characters 4-27:
- 293 | Toploop.directive_table
- ^^^^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: Toploop.directive_table
- File "topfind.ml", line 307, characters 4-27:
- 307 | Toploop.directive_table
- ^^^^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: Toploop.directive_table
- File "topfind.ml", line 319, characters 4-27:
- 319 | Toploop.directive_table
- ^^^^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: Toploop.directive_table
- ocamlc -I +compiler-libs -a -o findlib_top.cma topfind.cmo
- if [ "1" = "1" ]; then \
- cp topfind.in topfind.compat.in; \
- else \
- sed -e '/REMOVE_DIRECTORY_BEGIN/,/REMOVE_DIRECTORY_END/ d' topfind.in \
- > topfind.compat.in ; \
- fi
- USE_CYGPATH="0"; \
- export USE_CYGPATH; \
- cat topfind.compat.in | \
- ../../tools/patch '@SITELIB@' '/home/opam/.opam/5.0/lib' | \
- ../../tools/patch '@RELATIVE_PATHS@' 'false' \
- >topfind
- ocamlc -I +compiler-libs -opaque -I +unix -I +dynlink -c fl_dynload.mli
- ocamlc -I +compiler-libs -opaque -I +unix -I +dynlink -g -c fl_dynload.ml
- ocamlc -I +compiler-libs -a -o findlib_dynload.cma fl_dynload.cmo
- make[1]: Leaving directory '/home/opam/.opam/5.0/.opam-switch/build/ocamlfind.1.9.8/src/findlib'
- make all-config
- make[1]: Entering directory '/home/opam/.opam/5.0/.opam-switch/build/ocamlfind.1.9.8'
- if [ "false" = "true" ]; then \
- make findlib-relative; \
- else \
- make findlib-absolute; \
- fi
- make[2]: Entering directory '/home/opam/.opam/5.0/.opam-switch/build/ocamlfind.1.9.8'
- USE_CYGPATH="0"; \
- export USE_CYGPATH; \
- cat findlib.conf.in | \
- tools/patch '@SITELIB@' '/home/opam/.opam/5.0/lib' | \
- tools/patch '@FINDLIB_PATH@' '/home/opam/.opam/5.0/lib/ocaml:/home/opam/.opam/5.0/lib' -p >findlib.conf
- if ./tools/cmd_from_same_dir ocamlc; then \
- echo 'ocamlc="ocamlc.opt"' >>findlib.conf; \
- fi
- if ./tools/cmd_from_same_dir ocamlopt; then \
- echo 'ocamlopt="ocamlopt.opt"' >>findlib.conf; \
- fi
- if ./tools/cmd_from_same_dir ocamldep; then \
- echo 'ocamldep="ocamldep.opt"' >>findlib.conf; \
- fi
- if ./tools/cmd_from_same_dir ocamldoc; then \
- echo 'ocamldoc="ocamldoc.opt"' >>findlib.conf; \
- fi
- make[2]: Leaving directory '/home/opam/.opam/5.0/.opam-switch/build/ocamlfind.1.9.8'
- make[1]: Leaving directory '/home/opam/.opam/5.0/.opam-switch/build/ocamlfind.1.9.8'
Processing 54/110: [dune: ocaml 71] [ocamlfind: make opt]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "make" "opt" (CWD=/home/opam/.opam/5.0/.opam-switch/build/ocamlfind.1.9.8)
- for p in findlib; do ( cd src/$p; make opt ) || exit; done
- make[1]: Entering directory '/home/opam/.opam/5.0/.opam-switch/build/ocamlfind.1.9.8/src/findlib'
- ocamlopt -I +compiler-libs -g -opaque -I +unix -I +dynlink -c fl_compat.ml
- ocamlopt -I +compiler-libs -g -opaque -I +unix -I +dynlink -c fl_split.ml
- ocamlopt -I +compiler-libs -g -opaque -I +unix -I +dynlink -c findlib_config.ml
- ocamlopt -I +compiler-libs -g -opaque -I +unix -I +dynlink -c fl_metatoken.ml
- ocamlopt -I +compiler-libs -g -opaque -I +unix -I +dynlink -c fl_meta.ml
- ocamlopt -I +compiler-libs -g -opaque -I +unix -I +dynlink -c fl_metascanner.ml
- ocamlopt -I +compiler-libs -g -opaque -I +unix -I +dynlink -c fl_topo.ml
- ocamlopt -I +compiler-libs -g -opaque -I +unix -I +dynlink -c fl_package_base.ml
- ocamlopt -I +compiler-libs -g -opaque -I +unix -I +dynlink -c findlib.ml
- ocamlopt -I +compiler-libs -g -opaque -I +unix -I +dynlink -c fl_args.ml
- ocamlopt -I +compiler-libs -g -opaque -I +unix -I +dynlink -c fl_lint.ml
- ocamlopt -I +compiler-libs -g -a -o findlib.cmxa fl_compat.cmx fl_split.cmx findlib_config.cmx fl_metatoken.cmx fl_meta.cmx fl_metascanner.cmx fl_topo.cmx fl_package_base.cmx findlib.cmx fl_args.cmx fl_lint.cmx
- if [ 1 -gt 0 ]; then \
- ocamlopt -I +compiler-libs -g -shared -o findlib.cmxs fl_compat.cmx fl_split.cmx findlib_config.cmx fl_metatoken.cmx fl_meta.cmx fl_metascanner.cmx fl_topo.cmx fl_package_base.cmx findlib.cmx fl_args.cmx fl_lint.cmx; \
- fi
- ocamlopt -I +compiler-libs -g -opaque -I +unix -I +dynlink -c ocaml_args.ml
- ocamlopt -I +compiler-libs -g -opaque -I +unix -I +dynlink -c frontend.ml
- ocamlopt -I +compiler-libs -g -o ocamlfind_opt findlib.cmxa unix.cmxa \
- -I +unix -I +dynlink ocaml_args.cmx frontend.cmx
- ocamlopt -I +compiler-libs -g -opaque -I +unix -I +dynlink -c topfind.ml
- File "topfind.ml", line 128, characters 40-63:
- 128 | match Hashtbl.find Toploop.directive_table "ppx" with
- ^^^^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: Toploop.directive_table
- File "topfind.ml", line 258, characters 4-27:
- 258 | Toploop.directive_table
- ^^^^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: Toploop.directive_table
- File "topfind.ml", line 268, characters 4-27:
- 268 | Toploop.directive_table
- ^^^^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: Toploop.directive_table
- File "topfind.ml", line 280, characters 4-27:
- 280 | Toploop.directive_table
- ^^^^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: Toploop.directive_table
- File "topfind.ml", line 293, characters 4-27:
- 293 | Toploop.directive_table
- ^^^^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: Toploop.directive_table
- File "topfind.ml", line 307, characters 4-27:
- 307 | Toploop.directive_table
- ^^^^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: Toploop.directive_table
- File "topfind.ml", line 319, characters 4-27:
- 319 | Toploop.directive_table
- ^^^^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: Toploop.directive_table
- ocamlopt -I +compiler-libs -g -a -o findlib_top.cmxa topfind.cmx
- if [ 1 -gt 0 ]; then \
- ocamlopt -I +compiler-libs -g -shared -o findlib_top.cmxs topfind.cmx; \
- fi
- ocamlopt -I +compiler-libs -g -opaque -I +unix -I +dynlink -c fl_dynload.ml
- ocamlopt -I +compiler-libs -g -a -o findlib_dynload.cmxa fl_dynload.cmx
- if [ 1 -gt 0 ]; then \
- ocamlopt -I +compiler-libs -g -shared -o findlib_dynload.cmxs fl_dynload.cmx; \
- fi
- make[1]: Leaving directory '/home/opam/.opam/5.0/.opam-switch/build/ocamlfind.1.9.8/src/findlib'
-> compiled ocamlfind.1.9.8
Processing 54/110: [dune: ocaml 71]
Processing 55/110: [dune: ocaml 71] [ocamlfind: make install]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "make" "install" (CWD=/home/opam/.opam/5.0/.opam-switch/build/ocamlfind.1.9.8)
- if [ "0" -eq 1 ]; then \
- for x in camlp4 dbm graphics labltk num ocamlbuild; do \
- if [ -f "/home/opam/.opam/5.0/lib/$x/META" ]; then \
- if ! grep -Fq '[distributed with Ocaml]' "//home/opam/.opam/5.0/lib/$x/META"; then \
- rm -f site-lib-src/$x/META; \
- fi; \
- fi; \
- done; \
- test -f "site-lib-src/num/META" || rm -f "site-lib-src/num-top/META"; \
- fi
- echo 'SITELIB_META =' > Makefile.packages.in
- for x in `ls site-lib-src`; do test ! -f "site-lib-src/$x/META" || echo $x >> Makefile.packages.in; done
- tr '\n' ' ' < Makefile.packages.in > Makefile.packages
- rm Makefile.packages.in
- install -d "/home/opam/.opam/5.0/bin"
- install -d "/home/opam/.opam/5.0/man"
- make install-config
- make[1]: Entering directory '/home/opam/.opam/5.0/.opam-switch/build/ocamlfind.1.9.8'
- install -d "`dirname \"/home/opam/.opam/5.0/lib/findlib.conf\"`"
- test -f "/home/opam/.opam/5.0/lib/findlib.conf" || cp findlib.conf "/home/opam/.opam/5.0/lib/findlib.conf"
- make[1]: Leaving directory '/home/opam/.opam/5.0/.opam-switch/build/ocamlfind.1.9.8'
- for p in findlib; do ( cd src/$p; make install ); done
- make[1]: Entering directory '/home/opam/.opam/5.0/.opam-switch/build/ocamlfind.1.9.8/src/findlib'
- install -d "/home/opam/.opam/5.0/lib/findlib"
- install -d "/home/opam/.opam/5.0/bin"
- test 1 -eq 0 || install -d "/home/opam/.opam/5.0/lib/ocaml"
- test 1 -eq 0 || cp topfind "/home/opam/.opam/5.0/lib/ocaml/"
- files=` ../../tools/collect_files ../../Makefile.config \
- findlib.cmi findlib.mli findlib.cma findlib.cmxa findlib.a findlib.cmxs \
- findlib_config.cmi findlib_config.ml topfind.cmi topfind.mli \
- fl_args.cmi fl_lint.cmi fl_meta.cmi fl_split.cmi fl_topo.cmi ocaml_args.cmi \
- fl_package_base.mli fl_package_base.cmi fl_metascanner.mli fl_metascanner.cmi \
- fl_metatoken.cmi findlib_top.cma findlib_top.cmxa findlib_top.a findlib_top.cmxs \
- findlib_dynload.cma findlib_dynload.cmxa findlib_dynload.a findlib_dynload.cmxs fl_dynload.mli fl_dynload.cmi \
- META` && \
- cp $files "/home/opam/.opam/5.0/lib/findlib/"
- f="ocamlfind"; { test -f ocamlfind_opt && f="ocamlfind_opt"; }; \
- install -c $f "/home/opam/.opam/5.0/bin/ocamlfind"
- # the following "if" block is only needed for 4.00beta2
- if [ 1 -eq 0 -a -f "/home/opam/.opam/5.0/lib/ocaml/compiler-libs/topdirs.cmi" ]; then \
- cd "/home/opam/.opam/5.0/lib/ocaml/compiler-libs/"; \
- cp topdirs.cmi toploop.cmi "/home/opam/.opam/5.0/lib/findlib/"; \
- fi
- make[1]: Leaving directory '/home/opam/.opam/5.0/.opam-switch/build/ocamlfind.1.9.8/src/findlib'
- make install-meta
- make[1]: Entering directory '/home/opam/.opam/5.0/.opam-switch/build/ocamlfind.1.9.8'
- for x in bytes ; do install -d "/home/opam/.opam/5.0/lib/$x"; cp site-lib-src/$x/META "/home/opam/.opam/5.0/lib/$x/META.tmp" && mv "/home/opam/.opam/5.0/lib/$x/META.tmp" "/home/opam/.opam/5.0/lib/$x/META"; done
- install -d "/home/opam/.opam/5.0/lib/findlib"; cp Makefile.packages "/home/opam/.opam/5.0/lib/findlib/Makefile.packages"
- make[1]: Leaving directory '/home/opam/.opam/5.0/.opam-switch/build/ocamlfind.1.9.8'
- test ! -f 'site-lib-src/num-top/META' || { cd src/findlib; make install-num-top; }
- test ! -f 'site-lib-src/camlp4/META' || install -c tools/safe_camlp4 "/home/opam/.opam/5.0/bin"
- make install-doc
- make[1]: Entering directory '/home/opam/.opam/5.0/.opam-switch/build/ocamlfind.1.9.8'
- install -d "/home/opam/.opam/5.0/man/man1" "/home/opam/.opam/5.0/man/man3" "/home/opam/.opam/5.0/man/man5"
- cp doc/ref-man/ocamlfind.1 "/home/opam/.opam/5.0/man/man1"
- cp: cannot stat 'doc/ref-man/ocamlfind.1': No such file or directory
- make[1]: [Makefile:91: install-doc] Error 1 (ignored)
- cp doc/ref-man/META.5 doc/ref-man/site-lib.5 doc/ref-man/findlib.conf.5 "/home/opam/.opam/5.0/man/man5"
- cp: cannot stat 'doc/ref-man/META.5': No such file or directory
- cp: cannot stat 'doc/ref-man/site-lib.5': No such file or directory
- cp: cannot stat 'doc/ref-man/findlib.conf.5': No such file or directory
- make[1]: [Makefile:92: install-doc] Error 1 (ignored)
- make[1]: Leaving directory '/home/opam/.opam/5.0/.opam-switch/build/ocamlfind.1.9.8'
-> installed ocamlfind.1.9.8
Processing 55/110: [dune: ocaml 71]
Processing 56/110: [dune: ocaml 71]
-> installed base-bytes.base
Processing 57/110: [dune: ocaml 71]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "ocaml" "boot/bootstrap.ml" "-j" "71" (CWD=/home/opam/.opam/5.0/.opam-switch/build/dune.3.20.2)
- ocamlc -output-complete-exe -g -o .duneboot.exe -I boot -I +unix unix.cma boot/libs.ml boot/duneboot.ml
- ./.duneboot.exe -j 71
-
Processing 57/110: [dune: ./_boot/dune.exe build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "./_boot/dune.exe" "build" "dune.install" "--release" "--profile" "dune-bootstrap" "-j" "71" (CWD=/home/opam/.opam/5.0/.opam-switch/build/dune.3.20.2)
-> compiled dune.3.20.2
-> installed dune.3.20.2
Processing 59/110: [camlp-streams: dune build]
Processing 60/110: [camlp-streams: dune build] [cpu: autoconf]
Processing 61/110: [camlp-streams: dune build] [cpu: autoconf] [csexp: dune build]
Processing 62/110: [camlp-streams: dune build] [cpu: autoconf] [csexp: dune build] [dolog: dune build]
Processing 63/110: [camlp-streams: dune build] [cpu: autoconf] [csexp: dune build] [dolog: dune build] [minicli: dune build]
Processing 64/110: [camlp-streams: dune build] [cpu: autoconf] [csexp: dune build] [dolog: dune build] [minicli: dune build] [nlopt: dune build]
Processing 65/110: [camlp-streams: dune build] [cpu: autoconf] [csexp: dune build] [dolog: dune build] [minicli: dune build] [nlopt: dune build] [ocaml-compiler-libs: dune build]
Processing 66/110: [camlp-streams: dune build] [cpu: autoconf] [csexp: dune build] [dolog: dune build] [minicli: dune build] [nlopt: dune build] [ocaml-compiler-libs: dune build] [ocamlgraph: dune build]
Processing 67/110: [camlp-streams: dune build] [cpu: autoconf] [csexp: dune build] [dolog: dune build] [minicli: dune build] [nlopt: dune build] [ocaml-compiler-libs: dune build] [ocamlgraph: dune build] [ppx_derivers: dune build]
Processing 68/110: [camlp-streams: dune build] [cpu: autoconf] [csexp: dune build] [dolog: dune build] [minicli: dune build] [nlopt: dune build] [ocaml-compiler-libs: dune build] [ocamlgraph: dune build] [ppx_derivers: dune build] [sexplib0: dune build]
Processing 69/110: [camlp-streams: dune build] [cpu: autoconf] [csexp: dune build] [dolog: dune build] [minicli: dune build] [nlopt: dune build] [ocaml-compiler-libs: dune build] [ocamlgraph: dune build] [ppx_derivers: dune build] [sexplib0: dune build] [stdcompat: dune build]
Processing 70/110: [camlp-streams: dune build] [cpu: autoconf] [csexp: dune build] [dolog: dune build] [minicli: dune build] [nlopt: dune build] [ocaml-compiler-libs: dune build] [ocamlgraph: dune build] [ppx_derivers: dune build] [sexplib0: dune build] [stdcompat: dune build] [stdlib-shims: dune build]
Processing 71/110: [camlp-streams: dune build] [cpu: autoconf] [csexp: dune build] [dolog: dune build] [minicli: dune build] [nlopt: dune build] [ocaml-compiler-libs: dune build] [ocamlgraph: dune build] [ppx_derivers: dune build] [sexplib0: dune build] [stdcompat: dune build] [stdlib-shims: dune build] [vector3: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "ppx_derivers" "-j" "71" (CWD=/home/opam/.opam/5.0/.opam-switch/build/ppx_derivers.1.2.1)
-> compiled ppx_derivers.1.2.1
Processing 71/110: [camlp-streams: dune build] [cpu: autoconf] [csexp: dune build] [dolog: dune build] [minicli: dune build] [nlopt: dune build] [ocaml-compiler-libs: dune build] [ocamlgraph: dune build] [sexplib0: dune build] [stdcompat: dune build] [stdlib-shims: dune build] [vector3: dune build]
-> installed ppx_derivers.1.2.1
Processing 72/110: [camlp-streams: dune build] [cpu: autoconf] [csexp: dune build] [dolog: dune build] [minicli: dune build] [nlopt: dune build] [ocaml-compiler-libs: dune build] [ocamlgraph: dune build] [sexplib0: dune build] [stdcompat: dune build] [stdlib-shims: dune build] [vector3: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "csexp" "-j" "71" "@install" (CWD=/home/opam/.opam/5.0/.opam-switch/build/csexp.1.5.2)
-> compiled csexp.1.5.2
Processing 72/110: [camlp-streams: dune build] [cpu: autoconf] [dolog: dune build] [minicli: dune build] [nlopt: dune build] [ocaml-compiler-libs: dune build] [ocamlgraph: dune build] [sexplib0: dune build] [stdcompat: dune build] [stdlib-shims: dune build] [vector3: dune build]
-> installed csexp.1.5.2
Processing 73/110: [camlp-streams: dune build] [cpu: autoconf] [dolog: dune build] [minicli: dune build] [nlopt: dune build] [ocaml-compiler-libs: dune build] [ocamlgraph: dune build] [sexplib0: dune build] [stdcompat: dune build] [stdlib-shims: dune build] [vector3: dune build]
Processing 74/110: [camlp-streams: dune build] [cpu: autoconf] [dolog: dune build] [dune-configurator: rm] [minicli: dune build] [nlopt: dune build] [ocaml-compiler-libs: dune build] [ocamlgraph: dune build] [sexplib0: dune build] [stdcompat: dune build] [stdlib-shims: dune build] [vector3: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "camlp-streams" "-j" "71" "@install" (CWD=/home/opam/.opam/5.0/.opam-switch/build/camlp-streams.5.0.1)
-> compiled camlp-streams.5.0.1
Processing 74/110: [cpu: autoconf] [dolog: dune build] [dune-configurator: rm] [minicli: dune build] [nlopt: dune build] [ocaml-compiler-libs: dune build] [ocamlgraph: dune build] [sexplib0: dune build] [stdcompat: dune build] [stdlib-shims: dune build] [vector3: dune build]
-> installed camlp-streams.5.0.1
Processing 75/110: [cpu: autoconf] [dolog: dune build] [dune-configurator: rm] [minicli: dune build] [nlopt: dune build] [ocaml-compiler-libs: dune build] [ocamlgraph: dune build] [sexplib0: dune build] [stdcompat: dune build] [stdlib-shims: dune build] [vector3: dune build]
Processing 76/110: [batteries: dune build] [cpu: autoconf] [dolog: dune build] [dune-configurator: rm] [minicli: dune build] [nlopt: dune build] [ocaml-compiler-libs: dune build] [ocamlgraph: dune build] [sexplib0: dune build] [stdcompat: dune build] [stdlib-shims: dune build] [vector3: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "autoconf" (CWD=/home/opam/.opam/5.0/.opam-switch/build/cpu.2.0.0)
- configure.ac:8: warning: The macro `AC_HEADER_STDC' is obsolete.
- configure.ac:8: You should run autoupdate.
- ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from...
- configure.ac:8: the top level
Processing 76/110: [batteries: dune build] [cpu: autoheader] [dolog: dune build] [dune-configurator: rm] [minicli: dune build] [nlopt: dune build] [ocaml-compiler-libs: dune build] [ocamlgraph: dune build] [sexplib0: dune build] [stdcompat: dune build] [stdlib-shims: dune build] [vector3: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "dolog" "-j" "71" (CWD=/home/opam/.opam/5.0/.opam-switch/build/dolog.6.0.0)
-> compiled dolog.6.0.0
Processing 76/110: [batteries: dune build] [cpu: autoheader] [dune-configurator: rm] [minicli: dune build] [nlopt: dune build] [ocaml-compiler-libs: dune build] [ocamlgraph: dune build] [sexplib0: dune build] [stdcompat: dune build] [stdlib-shims: dune build] [vector3: dune build]
-> installed dolog.6.0.0
Processing 77/110: [batteries: dune build] [cpu: autoheader] [dune-configurator: rm] [minicli: dune build] [nlopt: dune build] [ocaml-compiler-libs: dune build] [ocamlgraph: dune build] [sexplib0: dune build] [stdcompat: dune build] [stdlib-shims: dune build] [vector3: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "minicli" "-j" "71" (CWD=/home/opam/.opam/5.0/.opam-switch/build/minicli.5.0.2)
-> compiled minicli.5.0.2
Processing 77/110: [batteries: dune build] [cpu: autoheader] [dune-configurator: rm] [nlopt: dune build] [ocaml-compiler-libs: dune build] [ocamlgraph: dune build] [sexplib0: dune build] [stdcompat: dune build] [stdlib-shims: dune build] [vector3: dune build]
-> installed minicli.5.0.2
Processing 78/110: [batteries: dune build] [cpu: autoheader] [dune-configurator: rm] [nlopt: dune build] [ocaml-compiler-libs: dune build] [ocamlgraph: dune build] [sexplib0: dune build] [stdcompat: dune build] [stdlib-shims: dune build] [vector3: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "nlopt" "-j" "71" (CWD=/home/opam/.opam/5.0/.opam-switch/build/nlopt.0.7.0)
-> compiled nlopt.0.7.0
Processing 78/110: [batteries: dune build] [cpu: autoheader] [dune-configurator: rm] [ocaml-compiler-libs: dune build] [ocamlgraph: dune build] [sexplib0: dune build] [stdcompat: dune build] [stdlib-shims: dune build] [vector3: dune build]
-> installed nlopt.0.7.0
Processing 79/110: [batteries: dune build] [cpu: autoheader] [dune-configurator: rm] [ocaml-compiler-libs: dune build] [ocamlgraph: dune build] [sexplib0: dune build] [stdcompat: dune build] [stdlib-shims: dune build] [vector3: dune build]
Processing 80/110: [batteries: dune build] [cpu: autoheader] [dune-configurator: rm] [ocaml-compiler-libs: dune build] [ocamlgraph: dune build] [sexplib0: dune build] [stdcompat: dune build] [stdlib-shims: dune build] [vector3: dune build]
-> installed nlopt-ocaml.transition
Processing 81/110: [batteries: dune build] [cpu: autoheader] [dune-configurator: rm] [ocaml-compiler-libs: dune build] [ocamlgraph: dune build] [sexplib0: dune build] [stdcompat: dune build] [stdlib-shims: dune build] [vector3: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "ocaml-compiler-libs" "-j" "71" "@install" (CWD=/home/opam/.opam/5.0/.opam-switch/build/ocaml-compiler-libs.v0.12.4)
-> compiled ocaml-compiler-libs.v0.12.4
Processing 81/110: [batteries: dune build] [cpu: autoheader] [dune-configurator: rm] [ocamlgraph: dune build] [sexplib0: dune build] [stdcompat: dune build] [stdlib-shims: dune build] [vector3: dune build]
-> installed ocaml-compiler-libs.v0.12.4
Processing 82/110: [batteries: dune build] [cpu: autoheader] [dune-configurator: rm] [ocamlgraph: dune build] [sexplib0: dune build] [stdcompat: dune build] [stdlib-shims: dune build] [vector3: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "sexplib0" "-j" "71" (CWD=/home/opam/.opam/5.0/.opam-switch/build/sexplib0.v0.17.0)
-> compiled sexplib0.v0.17.0
Processing 82/110: [batteries: dune build] [cpu: autoheader] [dune-configurator: rm] [ocamlgraph: dune build] [stdcompat: dune build] [stdlib-shims: dune build] [vector3: dune build]
-> installed sexplib0.v0.17.0
Processing 83/110: [batteries: dune build] [cpu: autoheader] [dune-configurator: rm] [ocamlgraph: dune build] [stdcompat: dune build] [stdlib-shims: dune build] [vector3: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "stdlib-shims" "-j" "71" (CWD=/home/opam/.opam/5.0/.opam-switch/build/stdlib-shims.0.3.0)
-> compiled stdlib-shims.0.3.0
Processing 83/110: [batteries: dune build] [cpu: autoheader] [dune-configurator: rm] [ocamlgraph: dune build] [stdcompat: dune build] [vector3: dune build]
-> installed stdlib-shims.0.3.0
Processing 84/110: [batteries: dune build] [cpu: autoheader] [dune-configurator: rm] [ocamlgraph: dune build] [stdcompat: dune build] [vector3: dune build]
Processing 85/110: [batteries: dune build] [cpu: autoheader] [dune-configurator: rm] [ocamlgraph: dune build] [ppxlib: dune build] [stdcompat: dune build] [vector3: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "vector3" "-j" "71" (CWD=/home/opam/.opam/5.0/.opam-switch/build/vector3.1.0.0)
-> compiled vector3.1.0.0
Processing 85/110: [batteries: dune build] [cpu: autoheader] [dune-configurator: rm] [ocamlgraph: dune build] [ppxlib: dune build] [stdcompat: dune build]
-> installed vector3.1.0.0
Processing 86/110: [batteries: dune build] [cpu: autoheader] [dune-configurator: rm] [ocamlgraph: dune build] [ppxlib: dune build] [stdcompat: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "rm" "-rf" "vendor/csexp" (CWD=/home/opam/.opam/5.0/.opam-switch/build/dune-configurator.3.20.2)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "rm" "-rf" "vendor/pp" (CWD=/home/opam/.opam/5.0/.opam-switch/build/dune-configurator.3.20.2)
Processing 86/110: [batteries: dune build] [cpu: autoheader] [dune-configurator: dune build] [ocamlgraph: dune build] [ppxlib: dune build] [stdcompat: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "autoheader" (CWD=/home/opam/.opam/5.0/.opam-switch/build/cpu.2.0.0)
Processing 86/110: [batteries: dune build] [cpu: ./configure] [dune-configurator: dune build] [ocamlgraph: dune build] [ppxlib: dune build] [stdcompat: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "stdcompat" "-j" "71" (CWD=/home/opam/.opam/5.0/.opam-switch/build/stdcompat.21.1)
-> compiled stdcompat.21.1
Processing 86/110: [batteries: dune build] [cpu: ./configure] [dune-configurator: dune build] [ocamlgraph: dune build] [ppxlib: dune build]
-> installed stdcompat.21.1
Processing 87/110: [batteries: dune build] [cpu: ./configure] [dune-configurator: dune build] [ocamlgraph: dune build] [ppxlib: dune build]
Processing 88/110: [batteries: dune build] [cpu: ./configure] [dune-configurator: dune build] [ocamlgraph: dune build] [ppxlib: dune build] [pyml: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "ocamlgraph" "-j" "71" "@install" (CWD=/home/opam/.opam/5.0/.opam-switch/build/ocamlgraph.2.2.0)
-> compiled ocamlgraph.2.2.0
Processing 88/110: [batteries: dune build] [cpu: ./configure] [dune-configurator: dune build] [ppxlib: dune build] [pyml: dune build]
-> installed ocamlgraph.2.2.0
Processing 89/110: [batteries: dune build] [cpu: ./configure] [dune-configurator: dune build] [ppxlib: dune build] [pyml: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "./configure" (CWD=/home/opam/.opam/5.0/.opam-switch/build/cpu.2.0.0)
- checking for ocamlc... ocamlc
- OCaml version is 5.0.0
- OCaml library path is /home/opam/.opam/5.0/lib/ocaml
- checking for ocamlopt... ocamlopt
- checking for ocamlc.opt... ocamlc.opt
- checking for ocamlopt.opt... ocamlopt.opt
- checking for dynlink.cmxa... no
- checking for ocaml... ocaml
- checking for ocamldep... ocamldep
- checking for ocamlmktop... ocamlmktop
- checking for ocamlmklib... ocamlmklib
- checking for ocamldoc... ocamldoc
- checking for ocamlbuild... no
- checking for gcc... gcc
- checking whether the C compiler works... yes
- checking for C compiler default output file name... a.out
- checking for suffix of executables...
- checking whether we are cross compiling... no
- checking for suffix of object files... o
- checking whether the compiler supports GNU C... yes
- checking whether gcc accepts -g... yes
- checking for gcc option to enable C11 features... none needed
- checking for stdio.h... yes
- checking for stdlib.h... yes
- checking for string.h... yes
- checking for inttypes.h... yes
- checking for stdint.h... yes
- checking for strings.h... yes
- checking for sys/stat.h... yes
- checking for sys/types.h... yes
- checking for unistd.h... yes
- checking for grep that handles long lines and -e... /usr/bin/grep
- checking for egrep... /usr/bin/grep -E
- checking for sched.h... yes
- checking for gcc options needed to detect all undeclared functions... none needed
- checking whether sched_setaffinity is declared... yes
- checking for mach/thread_policy.h... no
- checking whether thread_policy_set is declared... no
- configure: creating ./config.status
- config.status: creating src/config.h
Processing 89/110: [batteries: dune build] [cpu: dune build] [dune-configurator: dune build] [ppxlib: dune build] [pyml: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "cpu" "-j" "71" (CWD=/home/opam/.opam/5.0/.opam-switch/build/cpu.2.0.0)
-> compiled cpu.2.0.0
Processing 89/110: [batteries: dune build] [dune-configurator: dune build] [ppxlib: dune build] [pyml: dune build]
-> installed cpu.2.0.0
Processing 90/110: [batteries: dune build] [dune-configurator: dune build] [ppxlib: dune build] [pyml: dune build]
Processing 91/110: [batteries: dune build] [dune-configurator: dune build] [parany: dune build] [ppxlib: dune build] [pyml: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "dune-configurator" "-j" "71" "@install" (CWD=/home/opam/.opam/5.0/.opam-switch/build/dune-configurator.3.20.2)
-> compiled dune-configurator.3.20.2
Processing 91/110: [batteries: dune build] [parany: dune build] [ppxlib: dune build] [pyml: dune build]
-> installed dune-configurator.3.20.2
Processing 92/110: [batteries: dune build] [parany: dune build] [ppxlib: dune build] [pyml: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "parany" "-j" "71" (CWD=/home/opam/.opam/5.0/.opam-switch/build/parany.14.0.1)
-> compiled parany.14.0.1
Processing 92/110: [batteries: dune build] [ppxlib: dune build] [pyml: dune build]
-> installed parany.14.0.1
Processing 93/110: [batteries: dune build] [ppxlib: dune build] [pyml: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "batteries" "-j" "71" "@install" (CWD=/home/opam/.opam/5.0/.opam-switch/build/batteries.3.10.0)
-> compiled batteries.3.10.0
Processing 93/110: [ppxlib: dune build] [pyml: dune build]
-> installed batteries.3.10.0
Processing 94/110: [ppxlib: dune build] [pyml: dune build]
Processing 95/110: [bst: dune build] [ppxlib: dune build] [pyml: dune build]
Processing 96/110: [bst: dune build] [cpm: dune build] [ppxlib: dune build] [pyml: dune build]
Processing 97/110: [bst: dune build] [cpm: dune build] [line_oriented: dune build] [ppxlib: dune build] [pyml: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "pyml" "-j" "71" "@install" (CWD=/home/opam/.opam/5.0/.opam-switch/build/pyml.20250807)
-> compiled pyml.20250807
Processing 97/110: [bst: dune build] [cpm: dune build] [line_oriented: dune build] [ppxlib: dune build]
-> installed pyml.20250807
Processing 98/110: [bst: dune build] [cpm: dune build] [line_oriented: dune build] [ppxlib: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "line_oriented" "-j" "71" (CWD=/home/opam/.opam/5.0/.opam-switch/build/line_oriented.1.3.0)
-> compiled line_oriented.1.3.0
Processing 98/110: [bst: dune build] [cpm: dune build] [ppxlib: dune build]
-> installed line_oriented.1.3.0
Processing 99/110: [bst: dune build] [cpm: dune build] [ppxlib: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "bst" "-j" "71" (CWD=/home/opam/.opam/5.0/.opam-switch/build/bst.7.1.0)
-> compiled bst.7.1.0
Processing 99/110: [cpm: dune build] [ppxlib: dune build]
-> installed bst.7.1.0
Processing 100/110: [cpm: dune build] [ppxlib: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "cpm" "-j" "71" (CWD=/home/opam/.opam/5.0/.opam-switch/build/cpm.12.2.0)
-> compiled cpm.12.2.0
Processing 100/110: [ppxlib: dune build]
-> installed cpm.12.2.0
Processing 101/110: [ppxlib: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "ppxlib" "-j" "71" "@install" (CWD=/home/opam/.opam/5.0/.opam-switch/build/ppxlib.0.37.0)
-> compiled ppxlib.0.37.0
-> installed ppxlib.0.37.0
Processing 103/110: [extunix: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "extunix" "-j" "71" "@install" (CWD=/home/opam/.opam/5.0/.opam-switch/build/extunix.0.4.4)
- (cd _build/default/src && ../discover/discover.exe)
- checking EVENTFD.............ok
- checking ATFILE..............ok
- checking RENAMEAT2...........ok
- checking RENAME_WHITEOUT.....ok
- checking DIRFD...............ok
- checking STATVFS.............ok
- checking FSTATVFS............ok
- checking SIOCGIFCONF.........ok
- checking IFADDRS.............ok
- checking INET_NTOA...........ok
- checking INET_NTOP...........ok
- checking UNAME...............ok
- checking FADVISE.............ok
- checking FALLOCATE...........ok
- checking TTY_IOCTL...........ok
- checking TTYNAME.............ok
- checking CTERMID.............ok
- checking GETTID..............ok
- checking PGID................ok
- checking SETREUID............ok
- checking FSYNC...............ok
- checking FDATASYNC...........ok
- checking SYNC................ok
- checking SYNCFS..............ok
- checking REALPATH............ok
- checking SIGNALFD............ok
- checking PTRACE..............ok
- checking RESOURCE............ok
- checking MLOCKALL............ok
- checking STRPTIME............ok
- checking STRTIME.............ok
- checking TIMEZONE............ok
- checking TIMEGM..............ok
- checking PTS.................ok
- checking FCNTL...............ok
- checking TCPGRP..............ok
- checking EXECINFO............ok
- checking SETENV..............ok
- checking CLEARENV............ok
- checking MKDTEMP.............ok
- checking MALLOC_INFO.........ok
- checking MALLOC_STATS........ok
- checking MEMALIGN............ok
- checking ENDIAN..............ok
- checking READ_CREDENTIALS....ok
- checking FEXECVE.............ok
- checking SENDMSG.............ok
- checking PREAD...............ok
- checking PWRITE..............ok
- checking READ................ok
- checking WRITE...............ok
- checking MKSTEMPS............ok
- checking MKOSTEMPS...........ok
- checking SETRESUID...........ok
- checking SYSCONF.............ok
- checking SPLICE..............ok
- checking TEE.................ok
- checking VMSPLICE............ok
- checking SOCKOPT.............ok
- checking TCP_KEEPIDLE........ok
- checking TCP_KEEPCNT.........ok
- checking TCP_KEEPINTVL.......ok
- checking SO_REUSEPORT........ok
- checking POLL................ok
- checking SYSINFO.............ok
- checking MCHECK..............ok
- checking MOUNT...............ok
- checking UNSHARE.............ok
- checking CHROOT..............ok
- checking SYSLOG..............ok
- checking WAIT4...............ok
-> compiled extunix.0.4.4
-> installed extunix.0.4.4
Processing 105/110: [dokeysto: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "dokeysto" "-j" "71" (CWD=/home/opam/.opam/5.0/.opam-switch/build/dokeysto.4.0.2)
-> compiled dokeysto.4.0.2
-> installed dokeysto.4.0.2
Processing 107/110: [molenc: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "molenc" "-j" "71" (CWD=/home/opam/.opam/5.0/.opam-switch/build/molenc.16.17.1)
-> compiled molenc.16.17.1
Processing 108/110: [molenc: cp]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_diam.py" "/home/opam/.opam/5.0/bin/molenc_diam.py" (CWD=/home/opam/.opam/5.0/.opam-switch/build/molenc.16.17.1)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_ph4.py" "/home/opam/.opam/5.0/bin/molenc_ph4.py" (CWD=/home/opam/.opam/5.0/.opam-switch/build/molenc.16.17.1)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc.sh" "/home/opam/.opam/5.0/bin/molenc.sh" (CWD=/home/opam/.opam/5.0/.opam-switch/build/molenc.16.17.1)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_ligprep.sh" "/home/opam/.opam/5.0/bin/molenc_ligprep.sh" (CWD=/home/opam/.opam/5.0/.opam-switch/build/molenc.16.17.1)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_common.py" "/home/opam/.opam/5.0/bin/molenc_common.py" (CWD=/home/opam/.opam/5.0/.opam-switch/build/molenc.16.17.1)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_lean.py" "/home/opam/.opam/5.0/bin/molenc_lean.py" (CWD=/home/opam/.opam/5.0/.opam-switch/build/molenc.16.17.1)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_lizard.py" "/home/opam/.opam/5.0/bin/molenc_lizard.py" (CWD=/home/opam/.opam/5.0/.opam-switch/build/molenc.16.17.1)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_scan.py" "/home/opam/.opam/5.0/bin/molenc_scan.py" (CWD=/home/opam/.opam/5.0/.opam-switch/build/molenc.16.17.1)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_scan.sh" "/home/opam/.opam/5.0/bin/molenc_scan.sh" (CWD=/home/opam/.opam/5.0/.opam-switch/build/molenc.16.17.1)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_standardize.py" "/home/opam/.opam/5.0/bin/molenc_standardize.py" (CWD=/home/opam/.opam/5.0/.opam-switch/build/molenc.16.17.1)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_type_atoms.py" "/home/opam/.opam/5.0/bin/molenc_type_atoms.py" (CWD=/home/opam/.opam/5.0/.opam-switch/build/molenc.16.17.1)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/smi2png.py" "/home/opam/.opam/5.0/bin/molenc_smi2png.py" (CWD=/home/opam/.opam/5.0/.opam-switch/build/molenc.16.17.1)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_smisur.py" "/home/opam/.opam/5.0/bin/molenc_smisur.py" (CWD=/home/opam/.opam/5.0/.opam-switch/build/molenc.16.17.1)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_panascan.py" "/home/opam/.opam/5.0/bin/molenc_panascan.py" (CWD=/home/opam/.opam/5.0/.opam-switch/build/molenc.16.17.1)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_scaffold.py" "/home/opam/.opam/5.0/bin/molenc_scaffold.py" (CWD=/home/opam/.opam/5.0/.opam-switch/build/molenc.16.17.1)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_deepsmi.py" "/home/opam/.opam/5.0/bin/molenc_deepsmi.py" (CWD=/home/opam/.opam/5.0/.opam-switch/build/molenc.16.17.1)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_lead.py" "/home/opam/.opam/5.0/bin/molenc_lead.py" (CWD=/home/opam/.opam/5.0/.opam-switch/build/molenc.16.17.1)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_drug.py" "/home/opam/.opam/5.0/bin/molenc_drug.py" (CWD=/home/opam/.opam/5.0/.opam-switch/build/molenc.16.17.1)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_smi2cansmi.py" "/home/opam/.opam/5.0/bin/molenc_smi2cansmi.py" (CWD=/home/opam/.opam/5.0/.opam-switch/build/molenc.16.17.1)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_std.py" "/home/opam/.opam/5.0/bin/molenc_std.py" (CWD=/home/opam/.opam/5.0/.opam-switch/build/molenc.16.17.1)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_padel.py" "/home/opam/.opam/5.0/bin/molenc_padel.py" (CWD=/home/opam/.opam/5.0/.opam-switch/build/molenc.16.17.1)
-> installed molenc.16.17.1
Processing 109/110: [rankers: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "rankers" "-j" "71" (CWD=/home/opam/.opam/5.0/.opam-switch/build/rankers.2.0.9)
-> compiled rankers.2.0.9
-> installed rankers.2.0.9
Done.
<><> nlopt-ocaml.transition installed successfully ><><><><><><><><><><><><><><>
=> NLopt-ocaml has been renamed and the nlopt-ocaml package is now a transition package. Use the nlopt package instead.
# To update the current shell environment, run: eval $(opam env)
2025-10-23 16:58.16 ---> saved as "b894752883f84b1eb2c244d853b4dfc784a628f670786f5d5ab6308b272bea03"
Job succeeded